| SRR4457255 | 2nd_leaf | DAH20 | 3.80 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 3.24 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 4.34 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 3.40 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 3.43 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 5.09 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 4.76 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 6.30 | MC |
| SRR3745125 | anther | wt | 2.44 | MC |
| SRR3745126 | anther | wt | 1.94 | MC |
| SRR358797 | callus | wt | 3.93 | MC |
| SRR358798 | callus | wt | 5.64 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.73 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.49 | MC |
| SRR4947495 | root | control | 1.81 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 3.85 | MC |
| SRR7265407 | coleoptile | 3dA | 2.82 | MC |
| SRR7265408 | coleoptile | 3dA | 1.21 | MC |
| SRR7265412 | coleoptile | 4dA | 3.38 | MC |
| SRR7265413 | coleoptile | 4dA | 4.34 | MC |
| SRR7265414 | coleoptile | 4dA | 4.20 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 3.16 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.52 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.68 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.78 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 1.61 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.49 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.97 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.61 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.01 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.49 | MC |
| SRR7265376 | embryo | 1hA | 1.04 | MC |
| SRR7265377 | embryo | 1hA | 1.08 | MC |
| SRR7265378 | embryo | 1hA | 0.90 | MC |
| SRR7265379 | embryo | 1hN | 1.60 | MC |
| SRR7265380 | embryo | 1hN | 1.22 | MC |
| SRR7265381 | embryo | 1hN | 0.88 | MC |
| SRR7265382 | embryo | 3hA | 1.50 | MC |
| SRR7265383 | embryo | 3hA | 1.54 | MC |
| SRR7265384 | embryo | 3hA | 1.64 | MC |
| SRR7265385 | embryo | 3hN | 1.25 | MC |
| SRR7265386 | embryo | 3hN | 0.94 | MC |
| SRR7265387 | embryo | 3hN | 1.07 | MC |
| SRR2338866 | endosprem | control | 4.63 | MC |
| SRR976168 | flag_leaf | wild_type | 0.93 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.94 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.20 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.86 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.23 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.66 | MC |
| SRR4457241 | flag_leaf | DAH28 | 3.12 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.31 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.64 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.11 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.85 | MC |
| SRR8060835 | leaf | wild_type | 1.68 | MC |
| SRR8060836 | leaf | wild_type | 2.63 | MC |
| SRR8060837 | leaf | wild_type | 1.54 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.61 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 3.47 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.83 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 5.28 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 3.88 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.96 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.82 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.95 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 2.86 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.15 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.90 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.16 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.27 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.08 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.24 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.83 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 4.87 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.30 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.95 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.93 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.93 | MC |
| SRR1761529 | leaf | drought | 1.93 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.18 | MC |
| SRR6417967 | leaf | H2O_control | 2.80 | MC |
| SRR6417968 | leaf | H2O_control | 2.32 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.43 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.11 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 2.21 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.98 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.22 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.41 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.55 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.74 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.18 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.89 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.25 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.66 | MC |
| SRR6502088 | leaf | control | 2.92 | MC |
| SRR6502089 | leaf | control | 2.11 | MC |
| SRR6502090 | leaf | control | 2.21 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.72 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.41 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.92 | MC |
| SRR6502100 | leaf | control | 3.55 | MC |
| SRR6502101 | leaf | control | 2.17 | MC |
| SRR6502102 | leaf | control | 2.71 | MC |
| SRR5856927 | leaf | control | 1.44 | MC |
| SRR5856928 | leaf | control | 1.65 | MC |
| SRR5856930 | leaf | salt | 1.41 | MC |
| SRR5856932 | leaf | salt | 1.84 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 4.11 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 2.23 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.42 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 6.44 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.43 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 3.94 | MC |
| SRR6168979 | leaf | none (control) | 0.81 | MC |
| SRR6168980 | leaf | none (control) | 1.08 | MC |
| SRR6168981 | leaf | none (control) | 0.69 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.39 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.71 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.34 | MC |
| SRR8582888 | panicle | AM | 2.49 | MC |
| SRR5110429 | panicle | Dawn | 3.17 | MC |
| SRR5110430 | panicle | Dawn | 3.93 | MC |
| SRR5110432 | panicle | Dawn | 0.75 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.32 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.24 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.34 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.71 | MC |
| SRR5110440 | panicle | Dawn + 7h | 3.09 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.10 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.13 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 5.20 | MC |
| SRR5110446 | panicle | Dusk | 2.35 | MC |
| SRR5110447 | panicle | Dusk | 3.56 | MC |
| SRR5110448 | panicle | Dusk | 5.06 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.70 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.41 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.81 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.15 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.72 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.17 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.77 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.76 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.01 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 1.20 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.64 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.84 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.66 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 3.43 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.91 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 6.07 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 4.24 | MC |
| SRR5126157 | root | "mock,7_days" | 5.38 | MC |
| SRR4947478 | root | control | 1.39 | MC |
| SRR4947479 | root | control | 1.92 | MC |
| SRR4947482 | root | Al | 2.63 | MC |
| SRR4947483 | root | Al | 2.67 | MC |
| SRR4947487 | root | control | 2.69 | MC |
| SRR4947490 | root | Al | 1.93 | MC |
| SRR4947491 | root | Al | 2.24 | MC |
| SRR4947494 | root | control | 1.15 | MC |
| SRR4947498 | root | Al | 4.03 | MC |
| SRR4947499 | root | Al | 2.60 | MC |
| SRR4947502 | root | control | 3.22 | MC |
| SRR4947503 | root | control | 2.06 | MC |
| SRR4947506 | root | Al | 2.66 | MC |
| SRR4947507 | root | Al | 4.11 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.08 | MC |
| SRR6502092 | root | 100 mM NaCl | 3.20 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.47 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.41 | MC |
| SRR6502106 | root | control | 1.21 | MC |
| SRR6502108 | root | control | 1.80 | MC |
| SRR1740434 | root_differentiation_zone | wt | 3.36 | MC |
| SRR6441554 | seedling | wild_type | 2.84 | MC |
| SRR6441555 | seedling | wild_type | 3.07 | MC |
| SRR2154082 | seedling | wt | 0.80 | MC |
| SRR2154084 | seedling | wt | 3.46 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.42 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.68 | MC |
| SRR1944583 | seedling | no_treatment | 4.14 | MC |
| SRR358791 | seedling | wt | 4.59 | MC |
| SRR358792 | seedling | wt | 1.99 | MC |
| SRR358794 | seedling | wt | 4.49 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.57 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.15 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.32 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 2.26 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 2.33 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.03 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.96 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 2.68 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.70 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 1.79 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 3.09 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 2.99 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.73 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.07 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.77 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.52 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.96 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.83 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.77 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.40 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.51 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 3.04 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.24 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 5.10 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 5.83 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 6.29 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.49 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.96 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 5.34 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 3.76 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 4.12 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.45 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.98 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.92 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 2.86 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.28 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 4.46 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.30 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 4.57 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.22 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 3.94 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 2.06 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 2.07 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 3.89 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.60 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.99 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 3.25 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.42 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 2.96 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 3.31 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.57 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 3.37 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.38 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.51 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.31 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.55 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 4.30 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.05 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.87 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.80 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 1.56 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.15 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.43 | MC |