| SRR4457249 | 2nd_leaf | DAH4 | 2.21 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.47 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.55 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.99 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.04 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.72 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 3.59 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.22 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.19 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 3.52 | MC |
| SRR358795 | callus | wt | 4.44 | MC |
| SRR358796 | callus | wt | 5.34 | MC |
| SRR358797 | callus | wt | 5.19 | MC |
| SRR358798 | callus | wt | 5.89 | MC |
| SRR6320498 | carpel | wt | 3.03 | MC |
| SRR5560729 | caryopsis | wild_type | 5.07 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 2.33 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.98 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.56 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 2.19 | MC |
| SRR7265400 | coleoptile | 2dA | 3.76 | MC |
| SRR7265403 | coleoptile | 2dN | 3.94 | MC |
| SRR7265404 | coleoptile | 2dN | 3.24 | MC |
| SRR7265405 | coleoptile | 2dN | 3.47 | MC |
| SRR7265406 | coleoptile | 3dA | 2.20 | MC |
| SRR7265407 | coleoptile | 3dA | 2.10 | MC |
| SRR7265408 | coleoptile | 3dA | 1.62 | MC |
| SRR7265409 | coleoptile | 3dN | 2.03 | MC |
| SRR7265410 | coleoptile | 3dN | 2.03 | MC |
| SRR7265411 | coleoptile | 3dN | 1.48 | MC |
| SRR7265412 | coleoptile | 4dA | 1.94 | MC |
| SRR7265413 | coleoptile | 4dA | 5.15 | MC |
| SRR7265414 | coleoptile | 4dA | 4.21 | MC |
| SRR7265415 | coleoptile | 4dN | 2.33 | MC |
| SRR7265416 | coleoptile | 4dN | 1.18 | MC |
| SRR7265417 | coleoptile | 4dN | 1.52 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.28 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.91 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.84 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 3.23 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.37 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.35 | MC |
| SRR2338867 | endosprem | control | 1.06 | MC |
| SRR2338868 | endosprem | high_temperature | 1.10 | MC |
| SRR2338869 | endosprem | high_temperature | 0.80 | MC |
| SRR976168 | flag_leaf | wild_type | 1.92 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.61 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.68 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.89 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.40 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.70 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.46 | MC |
| SRR4457238 | flag_leaf | DAH20 | 3.09 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.99 | MC |
| SRR4457240 | flag_leaf | DAH28 | 4.37 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.61 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.82 | MC |
| SRR1213690 | flower | wt(flower buds) | 2.05 | MC |
| SRR1213691 | flower | wt | 2.16 | MC |
| SRR8060835 | leaf | wild_type | 0.78 | MC |
| SRR8060836 | leaf | wild_type | 0.99 | MC |
| SRR8060837 | leaf | wild_type | 0.60 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 1.45 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.18 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.60 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.34 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 5.37 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.50 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 5.37 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.50 | MC |
| SRR1761530 | leaf | control | 5.37 | MC |
| SRR1761531 | leaf | control | 5.50 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.28 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 3.80 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.13 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.93 | MC |
| SRR1213693 | leaf | wt | 3.41 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.33 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.77 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.74 | MC |
| SRR6502088 | leaf | control | 0.90 | MC |
| SRR6502089 | leaf | control | 2.53 | MC |
| SRR6502090 | leaf | control | 1.21 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.66 | MC |
| SRR5856928 | leaf | control | 0.30 | MC |
| SRR5856929 | leaf | control | 0.29 | MC |
| SRR5856933 | leaf | control | 0.57 | MC |
| SRR5856934 | leaf | control | 0.21 | MC |
| SRR5856938 | leaf | salt | 0.14 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 3.78 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 2.13 | MC |
| SRR6168973 | leaf | none (control) | 4.37 | MC |
| SRR6168974 | leaf | none (control) | 4.38 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.69 | MC |
| SRR6168980 | leaf | none (control) | 0.40 | MC |
| SRR6168981 | leaf | none (control) | 1.87 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.38 | MC |
| SRR8582890 | panicle | AM | 1.70 | MC |
| SRR8582891 | panicle | PM | 2.29 | MC |
| SRR8582892 | panicle | PM | 3.15 | MC |
| SRR8582893 | panicle | PM | 1.22 | MC |
| SRR5110446 | panicle | Dusk | 0.83 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.48 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.54 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.90 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.57 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.14 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.71 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.68 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.05 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.86 | MC |
| SRR5126147 | root | "mock,1_day" | 1.85 | MC |
| SRR5126148 | root | "mock,1_day" | 1.22 | MC |
| SRR5126149 | root | "mock,1_day" | 4.09 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.66 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.95 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.33 | MC |
| SRR5126157 | root | "mock,7_days" | 2.98 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.40 | MC |
| SRR5126167 | root | "mock,14_days" | 2.89 | MC |
| SRR5126169 | root | "mock,14_days" | 3.47 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.59 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.45 | MC |
| SRR4947488 | root | control | 0.50 | MC |
| SRR4947490 | root | Al | 0.48 | MC |
| SRR4947491 | root | Al | 0.70 | MC |
| SRR6502091 | root | 100 mM NaCl | 1.14 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.60 | MC |
| SRR6502093 | root | 100 mM NaCl | 1.35 | MC |
| SRR6502095 | root | control | 0.43 | MC |
| SRR6502096 | root | control | 0.88 | MC |
| SRR6502106 | root | control | 4.30 | MC |
| SRR6502107 | root | control | 3.43 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.44 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.59 | MC |
| SRR1740428 | root_meristematic_zone | wt | 2.88 | MC |
| SRR1740429 | root_meristematic_zone | wt | 2.29 | MC |
| SRR6441554 | seedling | wild_type | 2.93 | MC |
| SRR2154082 | seedling | wt | 1.02 | MC |
| SRR2154084 | seedling | wt | 0.60 | MC |
| SRR3098741 | seedling | wt | 2.04 | MC |
| SRR3098742 | seedling | wt | 1.20 | MC |
| SRR3098743 | seedling | wt | 1.93 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.84 | MC |
| SRR1944583 | seedling | no_treatment | 3.98 | MC |
| SRR358791 | seedling | wt | 5.53 | MC |
| SRR358792 | seedling | wt | 5.26 | MC |
| SRR358793 | seedling | wt | 4.41 | MC |
| SRR358794 | seedling | wt | 5.71 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.40 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.76 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.91 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.47 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.00 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.89 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.89 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.91 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.58 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.95 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 6.98 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 7.01 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.48 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 6.94 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.77 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 5.53 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 4.22 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 7.88 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 7.05 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.45 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 3.86 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 5.79 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 6.41 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.99 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.59 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 3.97 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 5.06 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 6.45 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.04 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 6.05 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 5.19 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 5.23 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.43 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 6.14 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 3.31 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.13 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 5.62 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.68 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.68 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.97 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.40 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.72 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.97 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.01 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.83 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.70 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.96 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.03 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.69 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.70 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.41 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.64 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.51 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.37 | MC |