| SRR358795 | callus | wt | 1.44 | MC |
| SRR358796 | callus | wt | 1.07 | MC |
| SRR358798 | callus | wt | 1.13 | MC |
| SRR5560727 | caryopsis | wild_type | 1.25 | MC |
| SRR5560728 | caryopsis | wild_type | 1.79 | MC |
| SRR5560729 | caryopsis | wild_type | 2.62 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.95 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.08 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.54 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.69 | MC |
| SRR7265402 | coleoptile | 2dA | 0.37 | MC |
| SRR7265404 | coleoptile | 2dN | 0.32 | MC |
| SRR7265409 | coleoptile | 3dN | 0.36 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.52 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.91 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.43 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.93 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.32 | MC |
| SRR7265388 | embryo | 12hA | 0.50 | MC |
| SRR7265389 | embryo | 12hA | 0.61 | MC |
| SRR7265390 | embryo | 12hA | 0.50 | MC |
| SRR7265391 | embryo | 12hN | 0.51 | MC |
| SRR7265393 | embryo | 12hN | 0.43 | MC |
| SRR2338868 | endosprem | high_temperature | 0.48 | MC |
| SRR2338869 | endosprem | high_temperature | 0.83 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.21 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.72 | MC |
| SRR1213691 | flower | wt | 1.09 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.46 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.67 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.72 | MC |
| SRR504365 | leaf | wt | 0.47 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.31 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.42 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.80 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.00 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.87 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.59 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.50 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.60 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.70 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.00 | MC |
| SRR5856927 | leaf | control | 0.62 | MC |
| SRR5856928 | leaf | control | 0.42 | MC |
| SRR5856929 | leaf | control | 0.76 | MC |
| SRR5856930 | leaf | salt | 0.23 | MC |
| SRR5856931 | leaf | salt | 0.36 | MC |
| SRR5856932 | leaf | salt | 0.27 | MC |
| SRR5856933 | leaf | control | 0.37 | MC |
| SRR5856934 | leaf | control | 0.25 | MC |
| SRR5856935 | leaf | control | 0.47 | MC |
| SRR5856936 | leaf | salt | 0.30 | MC |
| SRR5856937 | leaf | salt | 0.21 | MC |
| SRR6168973 | leaf | none (control) | 1.45 | MC |
| SRR6168974 | leaf | none (control) | 0.97 | MC |
| SRR6168975 | leaf | none (control) | 1.17 | MC |
| SRR6168981 | leaf | none (control) | 0.29 | MC |
| SRR8582889 | panicle | AM | 0.12 | MC |
| SRR4947496 | root | control | 2.22 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.53 | MC |
| SRR1633182 | panicle | WT | 0.76 | MC |
| SRR1633185 | panicle | WT | 1.24 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.80 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.97 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 2.15 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.75 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 4.01 | MC |
| SRR5126147 | root | "mock,1_day" | 1.69 | MC |
| SRR5126148 | root | "mock,1_day" | 1.53 | MC |
| SRR5126149 | root | "mock,1_day" | 2.56 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.81 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 2.17 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.33 | MC |
| SRR5126153 | root | "mock,7_days" | 2.16 | MC |
| SRR5126155 | root | "mock,7_days" | 2.44 | MC |
| SRR5126157 | root | "mock,7_days" | 1.48 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 2.21 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.40 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.87 | MC |
| SRR5126165 | root | "mock,14_days" | 1.73 | MC |
| SRR5126167 | root | "mock,14_days" | 1.39 | MC |
| SRR5126169 | root | "mock,14_days" | 1.81 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.22 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 2.60 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.66 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.97 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.65 | MC |
| SRR1213694 | root | wt | 1.42 | MC |
| SRR4947480 | root | control | 1.69 | MC |
| SRR4947481 | root | control | 1.73 | MC |
| SRR4947484 | root | Al | 2.22 | MC |
| SRR4947485 | root | Al | 2.23 | MC |
| SRR4947488 | root | control | 1.98 | MC |
| SRR4947489 | root | control | 2.27 | MC |
| SRR4947492 | root | Al | 2.31 | MC |
| SRR4947493 | root | Al | 2.62 | MC |
| SRR4947497 | root | control | 2.21 | MC |
| SRR4947500 | root | Al | 2.40 | MC |
| SRR4947501 | root | Al | 3.13 | MC |
| SRR4947504 | root | control | 2.47 | MC |
| SRR4947505 | root | control | 2.23 | MC |
| SRR4947508 | root | Al | 3.22 | MC |
| SRR4947509 | root | Al | 1.72 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.36 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.93 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.43 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.10 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.24 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.25 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.30 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.36 | MC |
| SRR6441554 | seedling | wild_type | 0.70 | MC |
| SRR6441555 | seedling | wild_type | 0.50 | MC |
| SRR2154086 | seedling | wt | 0.57 | MC |
| SRR2154087 | seedling | wt | 0.36 | MC |
| SRR3098741 | seedling | wt | 0.35 | MC |
| SRR3098742 | seedling | wt | 0.52 | MC |
| SRR3098743 | seedling | wt | 0.37 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 2.87 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.41 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.04 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.52 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.52 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.42 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.57 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.81 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.63 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.80 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.21 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.19 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.33 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.39 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.31 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.35 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.32 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.29 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.38 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.50 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.50 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.47 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.62 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 3.99 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.25 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 4.01 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.33 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 5.30 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 5.31 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 4.09 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 5.86 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.96 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 6.41 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 5.86 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 5.20 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.56 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.47 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.03 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.30 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 3.88 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.65 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.60 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 3.24 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 3.82 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 4.86 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 4.58 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.87 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.15 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.86 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 2.53 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.99 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.39 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.21 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.43 | MC |