| SRR4457252 | 2nd_leaf | DAH12 | 0.35 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.28 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.49 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.91 | MC |
| SRR3745126 | anther | wt | 5.26 | MC |
| SRR6320498 | carpel | wt | 0.99 | MC |
| SRR5560727 | caryopsis | wild_type | 2.37 | MC |
| SRR5560728 | caryopsis | wild_type | 1.16 | MC |
| SRR5560729 | caryopsis | wild_type | 3.05 | MC |
| SRR7265403 | coleoptile | 2dN | 1.48 | MC |
| SRR7265404 | coleoptile | 2dN | 1.41 | MC |
| SRR7265405 | coleoptile | 2dN | 1.37 | MC |
| SRR7265409 | coleoptile | 3dN | 1.06 | MC |
| SRR7265410 | coleoptile | 3dN | 0.69 | MC |
| SRR7265411 | coleoptile | 3dN | 0.88 | MC |
| SRR7265412 | coleoptile | 4dA | 0.46 | MC |
| SRR7265415 | coleoptile | 4dN | 0.91 | MC |
| SRR7265416 | coleoptile | 4dN | 0.77 | MC |
| SRR7265417 | coleoptile | 4dN | 1.49 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.54 | MC |
| SRR7265388 | embryo | 12hA | 2.88 | MC |
| SRR7265389 | embryo | 12hA | 3.42 | MC |
| SRR7265390 | embryo | 12hA | 2.89 | MC |
| SRR7265391 | embryo | 12hN | 3.71 | MC |
| SRR7265395 | embryo | 24hA | 1.33 | MC |
| SRR7265396 | embryo | 24hA | 2.45 | MC |
| SRR7265397 | embryo | 24hN | 2.98 | MC |
| SRR7265398 | embryo | 24hN | 3.25 | MC |
| SRR7265399 | embryo | 24hN | 3.09 | MC |
| SRR2338867 | endosprem | control | 0.79 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.28 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.26 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.46 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.49 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.53 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.87 | MC |
| SRR1213691 | flower | wt | 1.65 | MC |
| SRR8060835 | leaf | wild_type | 0.24 | MC |
| SRR8240824 | leaf | wild_type | 0.37 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.79 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.70 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.26 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.22 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.38 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.73 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.52 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.67 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.80 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.85 | MC |
| SRR1213692 | leaf | wt | 0.88 | MC |
| SRR1213693 | leaf | wt | 0.84 | MC |
| SRR6168973 | leaf | none (control) | 0.37 | MC |
| SRR6168979 | leaf | none (control) | 0.19 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.77 | MC |
| SRR5110446 | panicle | Dusk | 0.88 | MC |
| SRR5110447 | panicle | Dusk | 0.79 | MC |
| SRR5110448 | panicle | Dusk | 0.72 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.55 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.90 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.51 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.61 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.82 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.57 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.72 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 4.00 | MC |
| SRR5126147 | root | "mock,1_day" | 0.34 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.47 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.55 | MC |
| SRR5126153 | root | "mock,7_days" | 0.29 | MC |
| SRR5126155 | root | "mock,7_days" | 0.60 | MC |
| SRR5126157 | root | "mock,7_days" | 0.73 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.50 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.84 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.94 | MC |
| SRR5126167 | root | "mock,14_days" | 0.32 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.31 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.88 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 3.42 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.38 | MC |
| SRR1213695 | root | wt | 0.85 | MC |
| SRR2154086 | seedling | wt | 0.62 | MC |
| SRR2154087 | seedling | wt | 0.62 | MC |
| SRR3098743 | seedling | wt | 0.28 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.26 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.06 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.62 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.49 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.05 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.68 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.46 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.70 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.91 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.54 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.76 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.43 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.82 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.64 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.77 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.46 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.52 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.88 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.84 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.74 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.94 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.30 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.21 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.94 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.44 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 3.34 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 4.29 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.60 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.50 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.03 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.54 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.55 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.63 | MC |