| SRR4457249 | 2nd_leaf | DAH4 | 4.09 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 4.83 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 3.08 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 3.32 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 2.51 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.97 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.81 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.50 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.78 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.66 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 5.07 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.91 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.68 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 2.56 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 4.80 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 3.18 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.78 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.75 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.12 | MC |
| SRR2338868 | endosprem | high_temperature | 0.83 | MC |
| SRR2338869 | endosprem | high_temperature | 1.38 | MC |
| SRR4457231 | flag_leaf | DAH4 | 3.14 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.53 | MC |
| SRR4457235 | flag_leaf | DAH12 | 3.19 | MC |
| SRR4457236 | flag_leaf | DAH12 | 1.91 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.79 | MC |
| SRR4457238 | flag_leaf | DAH20 | 2.22 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.88 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.36 | MC |
| SRR4457241 | flag_leaf | DAH28 | 1.67 | MC |
| SRR4457242 | flag_leaf | DAH28 | 1.58 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.57 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.83 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.37 | MC |
| SRR4457246 | flag_leaf | DAH44 | 4.39 | MC |
| SRR4457247 | flag_leaf | DAH44 | 2.37 | MC |
| SRR4457248 | flag_leaf | DAH44 | 3.29 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.53 | MC |
| SRR1213691 | flower | wt | 3.04 | MC |
| SRR8240825 | leaf | wild_type | 2.09 | MC |
| SRR8240820 | leaf | wild_type | 1.23 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.56 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.96 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.20 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.15 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.56 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.94 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.48 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.47 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.64 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.71 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.38 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.63 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.00 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.78 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.91 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.89 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.05 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.15 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.70 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.44 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.75 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.03 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.28 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.88 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.94 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.74 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 3.22 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.13 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 3.25 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 2.36 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 3.22 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.13 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 3.25 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 2.36 | MC |
| SRR1761528 | leaf | drought | 3.22 | MC |
| SRR1761529 | leaf | drought | 1.13 | MC |
| SRR1761530 | leaf | control | 3.25 | MC |
| SRR1761531 | leaf | control | 2.36 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.63 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.69 | MC |
| SRR6417969 | leaf | H2O_control | 1.25 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.57 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.35 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 2.04 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.31 | MC |
| SRR8611900 | leaf | Non-inoculated | 2.40 | MC |
| SRR8611902 | leaf | Non-inoculated | 3.11 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.60 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.32 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.52 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.57 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.58 | MC |
| SRR1213692 | leaf | wt | 2.77 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.19 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.94 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.38 | MC |
| SRR6502088 | leaf | control | 2.96 | MC |
| SRR6502089 | leaf | control | 2.23 | MC |
| SRR6502090 | leaf | control | 1.95 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.67 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.49 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.38 | MC |
| SRR6502100 | leaf | control | 3.43 | MC |
| SRR6502101 | leaf | control | 1.35 | MC |
| SRR6502102 | leaf | control | 1.51 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.42 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 2.39 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.89 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.04 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 1.35 | MC |
| SRR6168973 | leaf | none (control) | 0.32 | MC |
| SRR6168975 | leaf | none (control) | 0.41 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.38 | MC |
| SRR8582888 | panicle | AM | 0.75 | MC |
| SRR8582889 | panicle | AM | 0.78 | MC |
| SRR8582890 | panicle | AM | 2.21 | MC |
| SRR5110430 | panicle | Dawn | 0.59 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.55 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.08 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.24 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.37 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.79 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.81 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.27 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.31 | MC |
| SRR5110445 | panicle | Dusk | 1.28 | MC |
| SRR5110446 | panicle | Dusk | 1.49 | MC |
| SRR5110447 | panicle | Dusk | 0.59 | MC |
| SRR5110448 | panicle | Dusk | 3.26 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.74 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.16 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.65 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 1.66 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.49 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.78 | MC |
| SRR1633185 | panicle | WT | 0.80 | MC |
| SRR5126167 | root | "mock,14_days" | 0.32 | MC |
| SRR6441554 | seedling | wild_type | 0.46 | MC |
| SRR6441555 | seedling | wild_type | 1.16 | MC |
| SRR2154083 | seedling | wt | 3.07 | MC |
| SRR2154084 | seedling | wt | 1.75 | MC |
| SRR2154085 | seedling | wt | 4.01 | MC |
| SRR3098743 | seedling | wt | 1.91 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.76 | MC |
| SRR2857720 | seedling | drought_stress_1h | 1.80 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.61 | MC |
| SRR358791 | seedling | wt | 6.50 | MC |
| SRR358792 | seedling | wt | 5.99 | MC |
| SRR358794 | seedling | wt | 4.55 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.01 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.82 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 9.34 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.07 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.79 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.30 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.29 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.51 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.38 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.26 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.88 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.61 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.49 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.04 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.23 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.88 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.70 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.61 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.68 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.40 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.74 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.09 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.53 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.97 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.79 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.39 | MC |