| SRR358797 | callus | wt | 7.73 | MC |
| SRR358798 | callus | wt | 5.75 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.94 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.85 | MC |
| SRR7265416 | coleoptile | 4dN | 0.57 | MC |
| SRR7265417 | coleoptile | 4dN | 0.49 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.36 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.21 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.53 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.64 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.82 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.48 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.65 | MC |
| SRR7265388 | embryo | 12hA | 1.70 | MC |
| SRR7265389 | embryo | 12hA | 1.10 | MC |
| SRR7265390 | embryo | 12hA | 2.13 | MC |
| SRR7265391 | embryo | 12hN | 4.41 | MC |
| SRR7265392 | embryo | 12hN | 3.03 | MC |
| SRR7265393 | embryo | 12hN | 4.59 | MC |
| SRR2338866 | endosprem | control | 4.61 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.99 | MC |
| SRR8060835 | leaf | wild_type | 1.53 | MC |
| SRR8060836 | leaf | wild_type | 2.79 | MC |
| SRR8060837 | leaf | wild_type | 1.02 | MC |
| SRR8240824 | leaf | wild_type | 0.63 | MC |
| SRR8240825 | leaf | wild_type | 0.93 | MC |
| SRR8240826 | leaf | wild_type | 0.64 | MC |
| SRR8240820 | leaf | wild_type | 0.44 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.58 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.54 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.43 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.55 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.66 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.01 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.54 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.57 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.75 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.54 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.52 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.07 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.38 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.89 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.52 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.55 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.54 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.03 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.21 | MC |
| SRR1213692 | leaf | wt | 0.49 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.38 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.36 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.63 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.82 | MC |
| SRR5856933 | leaf | control | 0.19 | MC |
| SRR5856936 | leaf | salt | 0.21 | MC |
| SRR5856938 | leaf | salt | 0.49 | MC |
| SRR6168973 | leaf | none (control) | 0.25 | MC |
| SRR6168974 | leaf | none (control) | 0.48 | MC |
| SRR6168980 | leaf | none (control) | 0.23 | MC |
| SRR6168981 | leaf | none (control) | 0.45 | MC |
| SRR5110429 | panicle | Dawn | 0.51 | MC |
| SRR5110430 | panicle | Dawn | 1.31 | MC |
| SRR5110431 | panicle | Dawn | 0.66 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.85 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.06 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.87 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.56 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.26 | MC |
| SRR5110439 | panicle | Dawn + 7h | 1.41 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.41 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.99 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.51 | MC |
| SRR5110445 | panicle | Dusk | 1.17 | MC |
| SRR5110447 | panicle | Dusk | 0.34 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.94 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.14 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.28 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.57 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.82 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.73 | MC |
| SRR5126147 | root | "mock,1_day" | 0.69 | MC |
| SRR5126148 | root | "mock,1_day" | 0.40 | MC |
| SRR5126167 | root | "mock,14_days" | 1.03 | MC |
| SRR1213694 | root | wt | 0.38 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.14 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.94 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.80 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.14 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.10 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.50 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.39 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.68 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.62 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.40 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.59 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.42 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.27 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.51 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.70 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.52 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.48 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.70 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.70 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.65 | MC |