| SRR358795 | callus | wt | 9.88 | MC |
| SRR358798 | callus | wt | 6.46 | MC |
| SRR6320473 | carpel | wt | 3.73 | MC |
| SRR6320498 | carpel | wt | 6.13 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.85 | MC |
| SRR7265402 | coleoptile | 2dA | 0.37 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.39 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.37 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.49 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.54 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.99 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 3.38 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.58 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.44 | MC |
| SRR2338867 | endosprem | control | 1.96 | MC |
| SRR8060837 | leaf | wild_type | 0.19 | MC |
| SRR8240824 | leaf | wild_type | 0.35 | MC |
| SRR8240819 | leaf | wild_type | 0.35 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.41 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.82 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.99 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.98 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.21 | MC |
| SRR6502088 | leaf | control | 0.30 | MC |
| SRR6502100 | leaf | control | 0.91 | MC |
| SRR5856928 | leaf | control | 0.30 | MC |
| SRR5856929 | leaf | control | 0.37 | MC |
| SRR5856930 | leaf | salt | 0.63 | MC |
| SRR5856931 | leaf | salt | 0.79 | MC |
| SRR5856932 | leaf | salt | 0.76 | MC |
| SRR5856933 | leaf | control | 0.66 | MC |
| SRR5856935 | leaf | control | 0.30 | MC |
| SRR5856936 | leaf | salt | 1.00 | MC |
| SRR5856937 | leaf | salt | 0.63 | MC |
| SRR5856938 | leaf | salt | 0.70 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 1.13 | MC |
| SRR6168980 | leaf | none (control) | 0.52 | MC |
| SRR8582889 | panicle | AM | 0.13 | MC |
| SRR8582890 | panicle | AM | 0.31 | MC |
| SRR8582891 | panicle | PM | 1.04 | MC |
| SRR8582892 | panicle | PM | 1.42 | MC |
| SRR8582893 | panicle | PM | 1.61 | MC |
| SRR5110429 | panicle | Dawn | 0.52 | MC |
| SRR5110431 | panicle | Dawn | 0.54 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.56 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.70 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.56 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.90 | MC |
| SRR5110445 | panicle | Dusk | 0.69 | MC |
| SRR5110446 | panicle | Dusk | 0.55 | MC |
| SRR5110447 | panicle | Dusk | 0.45 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.02 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.40 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.36 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.65 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.56 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.29 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.27 | MC |
| SRR1633182 | panicle | WT | 0.50 | MC |
| SRR1633185 | panicle | WT | 0.84 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 5.19 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.08 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.24 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.42 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.68 | MC |
| SRR5126157 | root | "mock,7_days" | 1.76 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.83 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.58 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.15 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.62 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.54 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.00 | MC |
| SRR4947481 | root | control | 1.04 | MC |
| SRR4947485 | root | Al | 0.49 | MC |
| SRR4947501 | root | Al | 0.97 | MC |
| SRR4947504 | root | control | 0.51 | MC |
| SRR4947505 | root | control | 0.84 | MC |
| SRR6502095 | root | control | 0.67 | MC |
| SRR2154084 | seedling | wt | 0.97 | MC |
| SRR2154087 | seedling | wt | 0.39 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.89 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.35 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.30 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.54 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.71 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.81 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.61 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.43 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.98 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.09 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.40 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.35 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.20 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.56 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.02 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.62 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.72 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.42 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.46 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.58 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.71 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.66 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.42 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.66 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.31 | MC |