| SRR4457249 | 2nd_leaf | DAH4 | 4.08 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 3.43 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.09 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.96 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 3.94 | MC |
| SRR3745126 | anther | wt | 0.44 | MC |
| SRR6320473 | carpel | wt | 6.58 | MC |
| SRR6320498 | carpel | wt | 3.31 | MC |
| SRR5560727 | caryopsis | wild_type | 0.73 | MC |
| SRR5560728 | caryopsis | wild_type | 0.61 | MC |
| SRR5560729 | caryopsis | wild_type | 0.38 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.46 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.39 | MC |
| SRR4457239 | flag_leaf | DAH20 | 4.36 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.81 | MC |
| SRR8060835 | leaf | wild_type | 2.65 | MC |
| SRR8060836 | leaf | wild_type | 2.91 | MC |
| SRR8060837 | leaf | wild_type | 2.07 | MC |
| SRR8240824 | leaf | wild_type | 2.16 | MC |
| SRR8240826 | leaf | wild_type | 0.53 | MC |
| SRR8240820 | leaf | wild_type | 1.91 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.40 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 1.22 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.59 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.85 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.49 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.79 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.03 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.24 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.06 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.98 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.38 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.41 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.84 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 2.22 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.19 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.06 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.87 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.13 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.57 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 3.39 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.14 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.90 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.07 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.73 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.18 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.24 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.75 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 2.58 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.44 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 2.21 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.08 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.10 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.09 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.87 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 3.77 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.91 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 3.59 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 2.03 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.18 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.41 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.93 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 2.03 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.20 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.42 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.97 | MC |
| SRR1761528 | leaf | drought | 2.03 | MC |
| SRR1761529 | leaf | drought | 1.21 | MC |
| SRR1761530 | leaf | control | 1.40 | MC |
| SRR1761531 | leaf | control | 1.97 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.30 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.59 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.00 | MC |
| SRR6417968 | leaf | H2O_control | 0.86 | MC |
| SRR6417969 | leaf | H2O_control | 1.35 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 3.43 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 3.45 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.86 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.73 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.14 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.91 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.06 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.83 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.28 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.90 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.42 | MC |
| SRR1213692 | leaf | wt | 1.30 | MC |
| SRR1213693 | leaf | wt | 0.78 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 1.04 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.24 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.28 | MC |
| SRR6502088 | leaf | control | 3.04 | MC |
| SRR6502089 | leaf | control | 2.58 | MC |
| SRR6502090 | leaf | control | 2.83 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.25 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.97 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.40 | MC |
| SRR6502100 | leaf | control | 2.41 | MC |
| SRR6502101 | leaf | control | 1.84 | MC |
| SRR6502102 | leaf | control | 2.19 | MC |
| SRR5856927 | leaf | control | 1.36 | MC |
| SRR5856930 | leaf | salt | 1.72 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.74 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 3.40 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.69 | MC |
| SRR6053395 | leaf | gibberellic acid (GA) | 8.66 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 6.32 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 4.62 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 3.47 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 3.58 | MC |
| SRR6168974 | leaf | none (control) | 4.53 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 3.29 | MC |
| SRR6168981 | leaf | none (control) | 2.41 | MC |
| SRR5110429 | panicle | Dawn | 2.94 | MC |
| SRR5110431 | panicle | Dawn | 2.75 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.43 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 2.47 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.16 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.20 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.69 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.49 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.14 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.92 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 1.90 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 2.60 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.06 | MC |
| SRR5110445 | panicle | Dusk | 3.07 | MC |
| SRR5110446 | panicle | Dusk | 2.39 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.41 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.61 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.21 | MC |
| SRR5126147 | root | "mock,1_day" | 0.49 | MC |
| SRR5126148 | root | "mock,1_day" | 0.73 | MC |
| SRR5126149 | root | "mock,1_day" | 0.92 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.69 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.97 | MC |
| SRR5126153 | root | "mock,7_days" | 0.60 | MC |
| SRR5126155 | root | "mock,7_days" | 0.95 | MC |
| SRR5126157 | root | "mock,7_days" | 0.76 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.24 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.21 | MC |
| SRR5126165 | root | "mock,14_days" | 4.56 | MC |
| SRR5126167 | root | "mock,14_days" | 0.59 | MC |
| SRR5126169 | root | "mock,14_days" | 0.31 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.66 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.59 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.04 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.71 | MC |
| SRR1213694 | root | wt | 0.78 | MC |
| SRR1213695 | root | wt | 0.69 | MC |
| SRR4947482 | root | Al | 0.33 | MC |
| SRR4947491 | root | Al | 0.53 | MC |
| SRR4947501 | root | Al | 0.69 | MC |
| SRR4947502 | root | control | 0.52 | MC |
| SRR4947507 | root | Al | 0.80 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.27 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.22 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.32 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.21 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.27 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.87 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.82 | MC |
| SRR358791 | seedling | wt | 1.92 | MC |
| SRR358792 | seedling | wt | 1.94 | MC |
| SRR358793 | seedling | wt | 2.24 | MC |
| SRR358794 | seedling | wt | 1.92 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.49 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 2.93 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 3.33 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.91 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.60 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.04 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.14 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 2.43 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.10 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.63 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.24 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.37 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.27 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.21 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.13 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 3.63 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.64 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 3.62 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.84 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.58 | MC |