| SRR5560729 | caryopsis | wild_type | 0.94 | MC |
| SRR7265400 | coleoptile | 2dA | 0.61 | MC |
| SRR7265401 | coleoptile | 2dA | 0.87 | MC |
| SRR7265402 | coleoptile | 2dA | 0.99 | MC |
| SRR7265403 | coleoptile | 2dN | 0.74 | MC |
| SRR7265404 | coleoptile | 2dN | 0.64 | MC |
| SRR7265405 | coleoptile | 2dN | 0.54 | MC |
| SRR7265406 | coleoptile | 3dA | 1.33 | MC |
| SRR7265407 | coleoptile | 3dA | 0.96 | MC |
| SRR7265409 | coleoptile | 3dN | 0.48 | MC |
| SRR7265411 | coleoptile | 3dN | 0.72 | MC |
| SRR7265413 | coleoptile | 4dA | 0.85 | MC |
| SRR7265414 | coleoptile | 4dA | 0.48 | MC |
| SRR7265416 | coleoptile | 4dN | 0.55 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.72 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.08 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.75 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.83 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 2.41 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.82 | MC |
| SRR7265378 | embryo | 1hA | 0.39 | MC |
| SRR7265383 | embryo | 3hA | 0.53 | MC |
| SRR7265387 | embryo | 3hN | 0.25 | MC |
| SRR7265388 | embryo | 12hA | 0.91 | MC |
| SRR7265389 | embryo | 12hA | 1.04 | MC |
| SRR7265390 | embryo | 12hA | 0.51 | MC |
| SRR7265392 | embryo | 12hN | 0.61 | MC |
| SRR7265393 | embryo | 12hN | 0.45 | MC |
| SRR7265395 | embryo | 24hA | 0.78 | MC |
| SRR7265396 | embryo | 24hA | 0.62 | MC |
| SRR7265397 | embryo | 24hN | 1.08 | MC |
| SRR7265398 | embryo | 24hN | 0.58 | MC |
| SRR7265399 | embryo | 24hN | 0.50 | MC |
| SRR2338867 | endosprem | control | 0.74 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.98 | MC |
| SRR1213691 | flower | wt | 0.68 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.95 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.98 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.22 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.50 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.49 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.49 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.20 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.12 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.57 | MC |
| SRR5856935 | leaf | control | 0.35 | MC |
| SRR5856937 | leaf | salt | 0.18 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.41 | MC |
| SRR5110430 | panicle | Dawn | 0.71 | MC |
| SRR5110432 | panicle | Dawn | 2.37 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.30 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.83 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.81 | MC |
| SRR5110440 | panicle | Dawn + 7h | 4.52 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.48 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.64 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.73 | MC |
| SRR5110445 | panicle | Dusk | 0.49 | MC |
| SRR5110447 | panicle | Dusk | 1.37 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.82 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.77 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.11 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.10 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.77 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.84 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.77 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.73 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.90 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.18 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.50 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.34 | MC |
| SRR5126169 | root | "mock,14_days" | 0.33 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.66 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.59 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.43 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.91 | MC |
| SRR1213695 | root | wt | 0.13 | MC |
| SRR4947479 | root | control | 3.42 | MC |
| SRR4947487 | root | control | 3.11 | MC |
| SRR4947491 | root | Al | 5.04 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.50 | MC |
| SRR6502106 | root | control | 0.51 | MC |
| SRR6502107 | root | control | 1.57 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.32 | MC |
| SRR1740432 | root_elongation_zone | wt | 1.51 | MC |
| SRR1740433 | root_elongation_zone | wt | 2.49 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.45 | MC |
| SRR2154086 | seedling | wt | 0.55 | MC |
| SRR2154082 | seedling | wt | 2.75 | MC |
| SRR2154083 | seedling | wt | 1.43 | MC |
| SRR2154084 | seedling | wt | 0.54 | MC |
| SRR3098742 | seedling | wt | 0.54 | MC |
| SRR3098743 | seedling | wt | 0.35 | MC |
| SRR2857719 | seedling | drought_stress_0h | 3.34 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.43 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.42 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.23 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.84 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.40 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.39 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.36 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.54 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.52 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.70 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 0.53 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.42 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.37 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.44 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.59 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.71 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.63 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.13 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.58 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.57 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.54 | MC |