| SRR5560727 | caryopsis | wild_type | 1.66 | MC |
| SRR5560728 | caryopsis | wild_type | 0.95 | MC |
| SRR5560729 | caryopsis | wild_type | 2.58 | MC |
| SRR7265400 | coleoptile | 2dA | 0.76 | MC |
| SRR7265401 | coleoptile | 2dA | 0.40 | MC |
| SRR7265402 | coleoptile | 2dA | 0.70 | MC |
| SRR7265403 | coleoptile | 2dN | 1.66 | MC |
| SRR7265404 | coleoptile | 2dN | 0.77 | MC |
| SRR7265405 | coleoptile | 2dN | 1.13 | MC |
| SRR7265410 | coleoptile | 3dN | 1.02 | MC |
| SRR7265411 | coleoptile | 3dN | 0.59 | MC |
| SRR7265417 | coleoptile | 4dN | 0.79 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.55 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.40 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.28 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.72 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.53 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.63 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.76 | MC |
| SRR7265376 | embryo | 1hA | 1.22 | MC |
| SRR7265377 | embryo | 1hA | 1.25 | MC |
| SRR7265378 | embryo | 1hA | 0.77 | MC |
| SRR7265379 | embryo | 1hN | 0.78 | MC |
| SRR7265381 | embryo | 1hN | 1.30 | MC |
| SRR7265382 | embryo | 3hA | 0.78 | MC |
| SRR7265385 | embryo | 3hN | 0.54 | MC |
| SRR7265386 | embryo | 3hN | 0.83 | MC |
| SRR7265387 | embryo | 3hN | 1.01 | MC |
| SRR7265388 | embryo | 12hA | 2.87 | MC |
| SRR7265389 | embryo | 12hA | 3.15 | MC |
| SRR7265390 | embryo | 12hA | 2.95 | MC |
| SRR7265391 | embryo | 12hN | 2.43 | MC |
| SRR7265392 | embryo | 12hN | 2.91 | MC |
| SRR7265393 | embryo | 12hN | 2.83 | MC |
| SRR7265394 | embryo | 24hA | 1.05 | MC |
| SRR7265395 | embryo | 24hA | 2.09 | MC |
| SRR7265396 | embryo | 24hA | 1.95 | MC |
| SRR7265397 | embryo | 24hN | 1.77 | MC |
| SRR7265398 | embryo | 24hN | 2.49 | MC |
| SRR7265399 | embryo | 24hN | 2.72 | MC |
| SRR2338869 | endosprem | high_temperature | 2.29 | MC |
| SRR1213691 | flower | wt | 1.44 | MC |
| SRR8240820 | leaf | wild_type | 0.66 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.11 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 3.21 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.19 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.91 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.27 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 2.55 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.47 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.34 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.85 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.82 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.45 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.60 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.56 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.23 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.18 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.87 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.28 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.78 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.80 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.30 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.60 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.60 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.34 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.08 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.02 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.14 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.45 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.48 | MC |
| SRR6417967 | leaf | H2O_control | 0.55 | MC |
| SRR6417968 | leaf | H2O_control | 1.17 | MC |
| SRR6417969 | leaf | H2O_control | 1.23 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.31 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.40 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.25 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.53 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.59 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.01 | MC |
| SRR6502088 | leaf | control | 2.67 | MC |
| SRR6502089 | leaf | control | 1.91 | MC |
| SRR6502090 | leaf | control | 2.03 | MC |
| SRR6168973 | leaf | none (control) | 0.63 | MC |
| SRR6168975 | leaf | none (control) | 0.43 | MC |
| SRR6168979 | leaf | none (control) | 0.66 | MC |
| SRR8582890 | panicle | AM | 1.18 | MC |
| SRR8582891 | panicle | PM | 5.04 | MC |
| SRR8582892 | panicle | PM | 7.55 | MC |
| SRR1633185 | panicle | WT | 3.00 | MC |
| SRR5126147 | root | "mock,1_day" | 0.71 | MC |
| SRR5126148 | root | "mock,1_day" | 0.83 | MC |
| SRR5126149 | root | "mock,1_day" | 0.40 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.91 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.93 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 1.65 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.80 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.72 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 2.22 | MC |
| SRR5126167 | root | "mock,14_days" | 0.36 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.38 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.72 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.39 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.41 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.23 | MC |
| SRR1213694 | root | wt | 0.48 | MC |
| SRR1213695 | root | wt | 0.21 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.40 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.11 | MC |
| SRR6441555 | seedling | wild_type | 0.40 | MC |
| SRR2154086 | seedling | wt | 0.92 | MC |
| SRR3098741 | seedling | wt | 0.45 | MC |
| SRR358791 | seedling | wt | 7.29 | MC |
| SRR358793 | seedling | wt | 5.02 | MC |
| SRR358794 | seedling | wt | 6.30 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.68 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 7.30 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 12.37 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.44 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.11 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.00 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.54 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.83 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.70 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.46 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.15 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.89 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.37 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.89 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.46 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.61 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.65 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.78 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.79 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.13 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.86 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.74 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.75 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.01 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.24 | MC |