| SRR4457251 | 2nd_leaf | DAH4 | 0.33 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.33 | MC |
| SRR3745125 | anther | wt | 2.19 | MC |
| SRR3745126 | anther | wt | 3.31 | MC |
| SRR3745127 | anther | wt | 2.88 | MC |
| SRR6320498 | carpel | wt | 2.29 | MC |
| SRR5560727 | caryopsis | wild_type | 0.68 | MC |
| SRR5560728 | caryopsis | wild_type | 1.46 | MC |
| SRR5560729 | caryopsis | wild_type | 1.50 | MC |
| SRR4947495 | root | control | 0.51 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.41 | MC |
| SRR7265411 | coleoptile | 3dN | 0.31 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.51 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.65 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.82 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.56 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.61 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.50 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.79 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.10 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.99 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.97 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.48 | MC |
| SRR7265376 | embryo | 1hA | 0.90 | MC |
| SRR7265377 | embryo | 1hA | 0.79 | MC |
| SRR7265378 | embryo | 1hA | 0.60 | MC |
| SRR7265379 | embryo | 1hN | 0.52 | MC |
| SRR7265380 | embryo | 1hN | 0.73 | MC |
| SRR7265381 | embryo | 1hN | 0.56 | MC |
| SRR7265382 | embryo | 3hA | 1.29 | MC |
| SRR7265383 | embryo | 3hA | 1.21 | MC |
| SRR7265384 | embryo | 3hA | 1.28 | MC |
| SRR7265385 | embryo | 3hN | 0.43 | MC |
| SRR7265386 | embryo | 3hN | 0.70 | MC |
| SRR7265387 | embryo | 3hN | 0.35 | MC |
| SRR2338867 | endosprem | control | 0.48 | MC |
| SRR2338868 | endosprem | high_temperature | 0.81 | MC |
| SRR2338869 | endosprem | high_temperature | 0.61 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.29 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.24 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.35 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.31 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.22 | MC |
| SRR1213691 | flower | wt | 1.42 | MC |
| SRR8060835 | leaf | wild_type | 0.28 | MC |
| SRR8060836 | leaf | wild_type | 0.70 | MC |
| SRR8060837 | leaf | wild_type | 0.19 | MC |
| SRR8240824 | leaf | wild_type | 0.41 | MC |
| SRR8240819 | leaf | wild_type | 0.43 | MC |
| SRR8240820 | leaf | wild_type | 0.36 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.32 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.96 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.04 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.48 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.03 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.47 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.14 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.57 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.85 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.61 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.32 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.85 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.14 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.51 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.05 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.50 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.62 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.69 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.62 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.96 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.61 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.55 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.73 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.71 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.87 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.94 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.38 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.54 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.49 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.38 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.54 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.49 | MC |
| SRR1761528 | leaf | drought | 1.38 | MC |
| SRR1761529 | leaf | drought | 1.54 | MC |
| SRR1761531 | leaf | control | 0.49 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.85 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.58 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.98 | MC |
| SRR6417967 | leaf | H2O_control | 0.61 | MC |
| SRR6417968 | leaf | H2O_control | 0.87 | MC |
| SRR6417969 | leaf | H2O_control | 0.56 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.50 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.53 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.05 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.49 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.28 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.41 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.66 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.53 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.76 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.92 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.37 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.96 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.42 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.31 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.46 | MC |
| SRR1213692 | leaf | wt | 0.60 | MC |
| SRR1213693 | leaf | wt | 0.85 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.39 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.53 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.50 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.48 | MC |
| SRR5856927 | leaf | control | 0.59 | MC |
| SRR5856928 | leaf | control | 0.61 | MC |
| SRR5856929 | leaf | control | 0.34 | MC |
| SRR5856930 | leaf | salt | 0.55 | MC |
| SRR5856931 | leaf | salt | 0.48 | MC |
| SRR5856932 | leaf | salt | 0.70 | MC |
| SRR5856933 | leaf | control | 0.43 | MC |
| SRR5856934 | leaf | control | 0.30 | MC |
| SRR5856935 | leaf | control | 0.60 | MC |
| SRR5856936 | leaf | salt | 0.86 | MC |
| SRR5856937 | leaf | salt | 0.89 | MC |
| SRR5856938 | leaf | salt | 0.79 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.11 | MC |
| SRR6168979 | leaf | none (control) | 0.29 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.31 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.26 | MC |
| SRR8582889 | panicle | AM | 0.27 | MC |
| SRR8582890 | panicle | AM | 0.24 | MC |
| SRR5110429 | panicle | Dawn | 1.54 | MC |
| SRR5110430 | panicle | Dawn | 1.31 | MC |
| SRR5110431 | panicle | Dawn | 2.69 | MC |
| SRR5110432 | panicle | Dawn | 0.48 | MC |
| SRR4947496 | root | control | 1.00 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.93 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.89 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.60 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.74 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.70 | MC |
| SRR5110439 | panicle | Dawn + 7h | 2.52 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.23 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.82 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.10 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.84 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.58 | MC |
| SRR5110445 | panicle | Dusk | 3.33 | MC |
| SRR5110446 | panicle | Dusk | 0.70 | MC |
| SRR5110447 | panicle | Dusk | 0.82 | MC |
| SRR5110448 | panicle | Dusk | 0.96 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.91 | MC |
| SRR5110450 | panicle | Dawn + 14h | 2.52 | MC |
| SRR5110451 | panicle | Dawn + 14h | 3.50 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.82 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.63 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.52 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.49 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.71 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.56 | MC |
| SRR5110458 | panicle | Dawn + 21h | 2.04 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.47 | MC |
| SRR5110460 | panicle | Dawn + 21h | 3.59 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.76 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.93 | MC |
| SRR1633182 | panicle | WT | 0.33 | MC |
| SRR1633185 | panicle | WT | 0.36 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.53 | MC |
| SRR5126147 | root | "mock,1_day" | 0.59 | MC |
| SRR5126148 | root | "mock,1_day" | 0.35 | MC |
| SRR5126149 | root | "mock,1_day" | 1.46 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.73 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.02 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126153 | root | "mock,7_days" | 0.36 | MC |
| SRR5126155 | root | "mock,7_days" | 0.40 | MC |
| SRR5126157 | root | "mock,7_days" | 0.72 | MC |
| SRR5126165 | root | "mock,14_days" | 0.42 | MC |
| SRR5126167 | root | "mock,14_days" | 0.63 | MC |
| SRR5126169 | root | "mock,14_days" | 0.63 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.37 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.58 | MC |
| SRR1213694 | root | wt | 0.87 | MC |
| SRR1213695 | root | wt | 0.73 | MC |
| SRR4947478 | root | control | 2.31 | MC |
| SRR4947479 | root | control | 1.10 | MC |
| SRR4947480 | root | control | 1.31 | MC |
| SRR4947481 | root | control | 1.21 | MC |
| SRR4947482 | root | Al | 0.52 | MC |
| SRR4947483 | root | Al | 0.80 | MC |
| SRR4947484 | root | Al | 0.60 | MC |
| SRR4947485 | root | Al | 0.64 | MC |
| SRR4947487 | root | control | 0.85 | MC |
| SRR4947488 | root | control | 1.05 | MC |
| SRR4947489 | root | control | 0.81 | MC |
| SRR4947490 | root | Al | 0.98 | MC |
| SRR4947491 | root | Al | 0.84 | MC |
| SRR4947493 | root | Al | 0.84 | MC |
| SRR4947494 | root | control | 1.73 | MC |
| SRR4947498 | root | Al | 0.99 | MC |
| SRR4947499 | root | Al | 0.87 | MC |
| SRR4947500 | root | Al | 0.72 | MC |
| SRR4947501 | root | Al | 0.74 | MC |
| SRR4947502 | root | control | 0.68 | MC |
| SRR4947503 | root | control | 1.57 | MC |
| SRR4947504 | root | control | 1.04 | MC |
| SRR4947505 | root | control | 0.51 | MC |
| SRR4947506 | root | Al | 1.08 | MC |
| SRR4947507 | root | Al | 0.84 | MC |
| SRR4947508 | root | Al | 0.60 | MC |
| SRR4947509 | root | Al | 0.84 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.88 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.17 | MC |
| SRR6502105 | root | 100 mM NaCl | 1.24 | MC |
| SRR6502107 | root | control | 0.78 | MC |
| SRR6502108 | root | control | 0.51 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.27 | MC |
| SRR6441555 | seedling | wild_type | 0.29 | MC |
| SRR2154082 | seedling | wt | 0.65 | MC |
| SRR2154083 | seedling | wt | 0.49 | MC |
| SRR2154084 | seedling | wt | 0.59 | MC |
| SRR3098741 | seedling | wt | 0.19 | MC |
| SRR3098743 | seedling | wt | 0.15 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.18 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.95 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.19 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.28 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.38 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.05 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.91 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.54 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.02 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.61 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.96 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.31 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.87 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.07 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.89 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.09 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.43 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.55 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.55 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.48 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.47 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.37 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.60 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.52 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.47 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.57 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.09 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.75 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.51 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.84 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.80 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 2.16 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.99 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 2.13 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 3.74 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.70 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.91 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.37 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 3.97 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 3.58 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.79 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.48 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.47 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.98 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.20 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.93 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.81 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.57 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 2.08 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.07 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.31 | MC |