| SRR4457251 | 2nd_leaf | DAH4 | 0.55 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.34 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.75 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.41 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.59 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.94 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 1.35 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 1.16 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.70 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.96 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 1.44 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 1.41 | MC |
| SRR6320473 | carpel | wt | 5.98 | MC |
| SRR5560727 | caryopsis | wild_type | 0.71 | MC |
| SRR5560728 | caryopsis | wild_type | 1.75 | MC |
| SRR5560729 | caryopsis | wild_type | 1.89 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.22 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.77 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.03 | MC |
| SRR7265400 | coleoptile | 2dA | 2.47 | MC |
| SRR7265401 | coleoptile | 2dA | 1.87 | MC |
| SRR7265402 | coleoptile | 2dA | 2.16 | MC |
| SRR7265403 | coleoptile | 2dN | 0.54 | MC |
| SRR7265404 | coleoptile | 2dN | 0.79 | MC |
| SRR7265405 | coleoptile | 2dN | 0.88 | MC |
| SRR7265406 | coleoptile | 3dA | 0.80 | MC |
| SRR7265407 | coleoptile | 3dA | 1.00 | MC |
| SRR7265408 | coleoptile | 3dA | 0.65 | MC |
| SRR7265411 | coleoptile | 3dN | 0.48 | MC |
| SRR7265413 | coleoptile | 4dA | 2.63 | MC |
| SRR7265414 | coleoptile | 4dA | 1.50 | MC |
| SRR7265417 | coleoptile | 4dN | 1.10 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.31 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.04 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 1.16 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 1.11 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.68 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.96 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.66 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 1.40 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.72 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 1.42 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.38 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.60 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.61 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.71 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.88 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.99 | MC |
| SRR7265378 | embryo | 1hA | 0.26 | MC |
| SRR7265385 | embryo | 3hN | 0.45 | MC |
| SRR7265386 | embryo | 3hN | 0.34 | MC |
| SRR7265388 | embryo | 12hA | 0.78 | MC |
| SRR7265389 | embryo | 12hA | 1.24 | MC |
| SRR7265390 | embryo | 12hA | 0.97 | MC |
| SRR7265391 | embryo | 12hN | 1.04 | MC |
| SRR7265392 | embryo | 12hN | 0.69 | MC |
| SRR7265396 | embryo | 24hA | 0.77 | MC |
| SRR7265397 | embryo | 24hN | 1.62 | MC |
| SRR7265398 | embryo | 24hN | 0.45 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.77 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.42 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.50 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.29 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.30 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.30 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.51 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.49 | MC |
| SRR4457245 | flag_leaf | DAH36 | 0.48 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.30 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.63 | MC |
| SRR1213691 | flower | wt | 2.14 | MC |
| SRR8060835 | leaf | wild_type | 1.34 | MC |
| SRR8060836 | leaf | wild_type | 1.06 | MC |
| SRR8060837 | leaf | wild_type | 1.59 | MC |
| SRR8240824 | leaf | wild_type | 1.27 | MC |
| SRR8240825 | leaf | wild_type | 0.38 | MC |
| SRR8240826 | leaf | wild_type | 0.68 | MC |
| SRR8240818 | leaf | wild_type | 0.96 | MC |
| SRR8240819 | leaf | wild_type | 1.72 | MC |
| SRR8240820 | leaf | wild_type | 1.30 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 2.58 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 2.24 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 1.47 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 2.61 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.38 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.95 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.29 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.50 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.58 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.92 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.45 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.65 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.07 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.41 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.57 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.50 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.79 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.72 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.56 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.48 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.33 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.74 | MC |
| SRR504365 | leaf | wt | 1.10 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.54 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.66 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.44 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 4.00 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 2.99 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.62 | MC |
| SRR1213693 | leaf | wt | 3.88 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 2.89 | MC |
| SRR5856927 | leaf | control | 0.47 | MC |
| SRR5856928 | leaf | control | 0.36 | MC |
| SRR5856929 | leaf | control | 0.93 | MC |
| SRR5856930 | leaf | salt | 1.41 | MC |
| SRR5856931 | leaf | salt | 1.56 | MC |
| SRR5856932 | leaf | salt | 0.91 | MC |
| SRR5856933 | leaf | control | 1.04 | MC |
| SRR5856934 | leaf | control | 0.70 | MC |
| SRR5856935 | leaf | control | 1.17 | MC |
| SRR5856937 | leaf | salt | 1.76 | MC |
| SRR5856938 | leaf | salt | 1.90 | MC |
| SRR6053396 | leaf | gibberellic acid (GA) | 1.81 | MC |
| SRR6053397 | leaf | gibberellic acid (GA) | 0.91 | MC |
| SRR6168973 | leaf | none (control) | 1.27 | MC |
| SRR6168974 | leaf | none (control) | 0.34 | MC |
| SRR6168975 | leaf | none (control) | 1.17 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 1.78 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.07 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.56 | MC |
| SRR5110429 | panicle | Dawn | 2.42 | MC |
| SRR5110430 | panicle | Dawn | 1.96 | MC |
| SRR5110431 | panicle | Dawn | 2.12 | MC |
| SRR5110432 | panicle | Dawn | 2.38 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.45 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.69 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.83 | MC |
| SRR5110437 | panicle | Dawn + 7h | 3.17 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.06 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.83 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.19 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 3.49 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 3.08 | MC |
| SRR5110445 | panicle | Dusk | 3.97 | MC |
| SRR5110446 | panicle | Dusk | 2.60 | MC |
| SRR5110447 | panicle | Dusk | 1.49 | MC |
| SRR5110448 | panicle | Dusk | 4.47 | MC |
| SRR5110449 | panicle | Dawn + 14h | 2.57 | MC |
| SRR5110450 | panicle | Dawn + 14h | 3.04 | MC |
| SRR5110451 | panicle | Dawn + 14h | 2.24 | MC |
| SRR5110452 | panicle | Dawn + 14h | 3.50 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 2.94 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.88 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.88 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.36 | MC |
| SRR5110460 | panicle | Dawn + 21h | 4.76 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.19 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.49 | MC |
| SRR5126147 | root | "mock,1_day" | 2.50 | MC |
| SRR5126148 | root | "mock,1_day" | 2.14 | MC |
| SRR5126149 | root | "mock,1_day" | 2.96 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 3.82 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 3.98 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.57 | MC |
| SRR5126153 | root | "mock,7_days" | 2.11 | MC |
| SRR5126155 | root | "mock,7_days" | 3.22 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 4.07 | MC |
| SRR5126169 | root | "mock,14_days" | 3.37 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 4.78 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.57 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.77 | MC |
| SRR1213694 | root | wt | 0.25 | MC |
| SRR4947481 | root | control | 0.91 | MC |
| SRR4947482 | root | Al | 0.36 | MC |
| SRR4947485 | root | Al | 0.92 | MC |
| SRR4947490 | root | Al | 1.27 | MC |
| SRR4947498 | root | Al | 1.40 | MC |
| SRR4947501 | root | Al | 0.57 | MC |
| SRR4947502 | root | control | 1.26 | MC |
| SRR4947507 | root | Al | 1.75 | MC |
| SRR4947508 | root | Al | 1.64 | MC |
| SRR6502091 | root | 100 mM NaCl | 2.51 | MC |
| SRR6502092 | root | 100 mM NaCl | 1.58 | MC |
| SRR6502093 | root | 100 mM NaCl | 5.39 | MC |
| SRR6502096 | root | control | 2.16 | MC |
| SRR6502104 | root | 100 mM NaCl | 3.87 | MC |
| SRR6502106 | root | control | 1.28 | MC |
| SRR1740435 | root_differentiation_zone | wt | 1.01 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.83 | MC |
| SRR6441554 | seedling | wild_type | 1.15 | MC |
| SRR6441555 | seedling | wild_type | 2.95 | MC |
| SRR2154086 | seedling | wt | 1.27 | MC |
| SRR2154082 | seedling | wt | 0.61 | MC |
| SRR2154083 | seedling | wt | 1.59 | MC |
| SRR2154084 | seedling | wt | 0.89 | MC |
| SRR2154085 | seedling | wt | 2.94 | MC |
| SRR2154087 | seedling | wt | 1.98 | MC |
| SRR3098742 | seedling | wt | 1.59 | MC |
| SRR3098743 | seedling | wt | 1.26 | MC |
| SRR2857719 | seedling | drought_stress_0h | 1.76 | MC |
| SRR2857720 | seedling | drought_stress_1h | 3.47 | MC |
| SRR358791 | seedling | wt | 5.25 | MC |
| SRR358792 | seedling | wt | 6.95 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 8.44 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.48 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.54 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.11 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.46 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.72 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.25 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.26 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.16 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 2.52 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.23 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.39 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.17 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.19 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.36 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.96 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 2.24 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.58 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.80 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.47 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.03 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.75 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.83 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.20 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.20 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.10 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.14 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.69 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.93 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.98 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.87 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.00 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 1.79 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.11 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 1.58 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.49 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.83 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 3.44 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.16 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.10 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.77 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 3.37 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.47 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 2.59 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.95 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.44 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.61 | MC |