| SRR4457249 | 2nd_leaf | DAH4 | 1.25 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.11 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.81 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 1.91 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 2.31 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 1.54 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.41 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 1.00 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.08 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 1.71 | MC |
| SRR358795 | callus | wt | 1.04 | MC |
| SRR358796 | callus | wt | 1.30 | MC |
| SRR358797 | callus | wt | 1.44 | MC |
| SRR358798 | callus | wt | 1.77 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.53 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.74 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.71 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.61 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.66 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.33 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.51 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.38 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.32 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.29 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.33 | MC |
| SRR7265376 | embryo | 1hA | 0.70 | MC |
| SRR7265377 | embryo | 1hA | 0.82 | MC |
| SRR7265378 | embryo | 1hA | 0.80 | MC |
| SRR7265379 | embryo | 1hN | 0.96 | MC |
| SRR7265380 | embryo | 1hN | 0.83 | MC |
| SRR7265381 | embryo | 1hN | 0.75 | MC |
| SRR7265384 | embryo | 3hA | 0.31 | MC |
| SRR7265385 | embryo | 3hN | 0.45 | MC |
| SRR7265386 | embryo | 3hN | 0.44 | MC |
| SRR7265387 | embryo | 3hN | 0.42 | MC |
| SRR976168 | flag_leaf | wild_type | 2.41 | MC |
| SRR4457231 | flag_leaf | DAH4 | 2.25 | MC |
| SRR4457232 | flag_leaf | DAH4 | 2.26 | MC |
| SRR4457233 | flag_leaf | DAH4 | 2.62 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.95 | MC |
| SRR4457235 | flag_leaf | DAH12 | 2.95 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.38 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.96 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.26 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.28 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.97 | MC |
| SRR4457244 | flag_leaf | DAH36 | 3.16 | MC |
| SRR4457245 | flag_leaf | DAH36 | 3.31 | MC |
| SRR8060835 | leaf | wild_type | 1.76 | MC |
| SRR8060837 | leaf | wild_type | 1.80 | MC |
| SRR8240824 | leaf | wild_type | 0.34 | MC |
| SRR8240825 | leaf | wild_type | 0.37 | MC |
| SRR8240826 | leaf | wild_type | 0.58 | MC |
| SRR8240819 | leaf | wild_type | 0.22 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.37 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.43 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.85 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.94 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.25 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.60 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.33 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.53 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.24 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.31 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.47 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.91 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 1.82 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.10 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.89 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 1.42 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.90 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 1.43 | MC |
| SRR1761528 | leaf | drought | 0.89 | MC |
| SRR1761529 | leaf | drought | 1.42 | MC |
| SRR6417969 | leaf | H2O_control | 0.58 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 1.56 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 1.01 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.56 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.97 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 1.02 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 1.07 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 1.08 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.90 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.33 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.85 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.75 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.73 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.47 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.59 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.48 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.63 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.48 | MC |
| SRR1213692 | leaf | wt | 1.32 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.33 | MC |
| SRR6502088 | leaf | control | 0.60 | MC |
| SRR6502089 | leaf | control | 0.55 | MC |
| SRR6502090 | leaf | control | 0.67 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.85 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 0.58 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.64 | MC |
| SRR6502100 | leaf | control | 0.77 | MC |
| SRR6502101 | leaf | control | 0.94 | MC |
| SRR6502102 | leaf | control | 0.72 | MC |
| SRR8582890 | panicle | AM | 0.37 | MC |
| SRR5110429 | panicle | Dawn | 1.08 | MC |
| SRR5110430 | panicle | Dawn | 1.36 | MC |
| SRR5110431 | panicle | Dawn | 0.89 | MC |
| SRR5110432 | panicle | Dawn | 0.42 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.43 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.52 | MC |
| SRR5110447 | panicle | Dusk | 0.33 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.29 | MC |
| SRR5110459 | panicle | Dawn + 21h | 0.64 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.27 | MC |
| SRR1633182 | panicle | WT | 0.31 | MC |
| SRR1633185 | panicle | WT | 0.55 | MC |
| SRR1213695 | root | wt | 0.41 | MC |
| SRR6441555 | seedling | wild_type | 0.36 | MC |
| SRR2154082 | seedling | wt | 1.19 | MC |
| SRR2154083 | seedling | wt | 0.63 | MC |
| SRR2154084 | seedling | wt | 0.47 | MC |
| SRR2154085 | seedling | wt | 0.51 | MC |
| SRR2154087 | seedling | wt | 0.58 | MC |
| SRR3098741 | seedling | wt | 0.37 | MC |
| SRR3098742 | seedling | wt | 0.29 | MC |
| SRR3098743 | seedling | wt | 0.31 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.36 | MC |
| SRR1944583 | seedling | no_treatment | 1.73 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 1.49 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.69 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.86 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.07 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.19 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.41 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.76 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.04 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.12 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.59 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.81 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.83 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.17 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.85 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.71 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.64 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.32 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.14 | MC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 1.39 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 1.12 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.67 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.07 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 1.42 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 1.61 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.26 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.64 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.55 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.62 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.80 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 1.49 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.97 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.65 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.54 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.49 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.23 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.10 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.98 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.29 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.37 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.29 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.28 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.22 | MC |