| SRR4457249 | 2nd_leaf | DAH4 | 3.23 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.50 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 2.17 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.22 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 2.90 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.71 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.40 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.07 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 2.74 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.62 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 4.06 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.74 | MC |
| SRR4457265 | 2nd_leaf | DAH44 | 1.15 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.84 | MC |
| SRR5560727 | caryopsis | wild_type | 3.88 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 2.68 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.50 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.42 | MC |
| SRR7265374 | embryo | dry seed 0 h | 2.63 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.85 | MC |
| SRR7265376 | embryo | 1hA | 3.26 | MC |
| SRR7265377 | embryo | 1hA | 2.70 | MC |
| SRR7265378 | embryo | 1hA | 2.11 | MC |
| SRR7265379 | embryo | 1hN | 3.27 | MC |
| SRR7265380 | embryo | 1hN | 3.62 | MC |
| SRR7265381 | embryo | 1hN | 3.13 | MC |
| SRR2338867 | endosprem | control | 2.20 | MC |
| SRR2338868 | endosprem | high_temperature | 1.97 | MC |
| SRR4457239 | flag_leaf | DAH20 | 3.43 | MC |
| SRR4457240 | flag_leaf | DAH28 | 2.14 | MC |
| SRR4457241 | flag_leaf | DAH28 | 2.26 | MC |
| SRR4457242 | flag_leaf | DAH28 | 2.18 | MC |
| SRR4457243 | flag_leaf | DAH36 | 3.04 | MC |
| SRR4457244 | flag_leaf | DAH36 | 2.82 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.66 | MC |
| SRR4457246 | flag_leaf | DAH44 | 1.02 | MC |
| SRR4457247 | flag_leaf | DAH44 | 1.76 | MC |
| SRR4457248 | flag_leaf | DAH44 | 1.36 | MC |
| SRR8060835 | leaf | wild_type | 1.53 | MC |
| SRR8060837 | leaf | wild_type | 2.20 | MC |
| SRR8240824 | leaf | wild_type | 0.85 | MC |
| SRR8240825 | leaf | wild_type | 0.27 | MC |
| SRR8240826 | leaf | wild_type | 0.70 | MC |
| SRR8240818 | leaf | wild_type | 0.31 | MC |
| SRR8240819 | leaf | wild_type | 0.99 | MC |
| SRR8240820 | leaf | wild_type | 1.90 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.19 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 4.04 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.22 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.27 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 3.12 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.18 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 4.37 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 4.77 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 2.12 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.97 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.69 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.16 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 3.05 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 4.05 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 4.04 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.18 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 4.74 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 2.97 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.50 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 3.68 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.04 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 1.82 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 2.30 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 4.74 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.77 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 1.82 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 2.30 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 4.74 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.77 | MC |
| SRR1761528 | leaf | drought | 1.82 | MC |
| SRR1761529 | leaf | drought | 2.30 | MC |
| SRR1761530 | leaf | control | 4.74 | MC |
| SRR1761531 | leaf | control | 5.77 | MC |
| SRR504365 | leaf | wt | 0.66 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.62 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.76 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 2.41 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 1.99 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 2.43 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 2.37 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.12 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.53 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.58 | MC |
| SRR1213692 | leaf | wt | 0.87 | MC |
| SRR1213693 | leaf | wt | 0.42 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 4.06 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.05 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.74 | MC |
| SRR6502088 | leaf | control | 3.38 | MC |
| SRR6502090 | leaf | control | 3.66 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.40 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 3.70 | MC |
| SRR6502100 | leaf | control | 2.29 | MC |
| SRR6502101 | leaf | control | 3.85 | MC |
| SRR6502102 | leaf | control | 3.86 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.46 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 1.68 | MC |
| SRR6168980 | leaf | none (control) | 0.38 | MC |
| SRR6168981 | leaf | none (control) | 1.31 | MC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.50 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 2.11 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 2.92 | MC |
| SRR8582891 | panicle | PM | 2.16 | MC |
| SRR8582892 | panicle | PM | 2.49 | MC |
| SRR8582893 | panicle | PM | 1.81 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.56 | MC |
| SRR1633182 | panicle | WT | 2.63 | MC |
| SRR1633185 | panicle | WT | 4.60 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 2.47 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 2.84 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 5.28 | MC |
| SRR5126149 | root | "mock,1_day" | 4.53 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 2.21 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.24 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 2.26 | MC |
| SRR5126155 | root | "mock,7_days" | 4.21 | MC |
| SRR5126157 | root | "mock,7_days" | 3.68 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 1.61 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.09 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 3.87 | MC |
| SRR5126165 | root | "mock,14_days" | 3.84 | MC |
| SRR5126167 | root | "mock,14_days" | 1.64 | MC |
| SRR5126169 | root | "mock,14_days" | 3.38 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.72 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.32 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 2.06 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.05 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 2.52 | MC |
| SRR1213694 | root | wt | 0.53 | MC |
| SRR1213695 | root | wt | 0.89 | MC |
| SRR6502094 | root | control | 3.23 | MC |
| SRR6502095 | root | control | 4.02 | MC |
| SRR6502096 | root | control | 3.40 | MC |
| SRR6502106 | root | control | 4.16 | MC |
| SRR6502108 | root | control | 4.69 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.99 | MC |
| SRR1740431 | root_elongation_zone | wt | 3.88 | MC |
| SRR1740428 | root_meristematic_zone | wt | 3.52 | MC |
| SRR2154086 | seedling | wt | 2.94 | MC |
| SRR2154085 | seedling | wt | 2.52 | MC |
| SRR2154087 | seedling | wt | 3.14 | MC |
| SRR3098741 | seedling | wt | 2.14 | MC |
| SRR2857721 | seedling | drought_stress_6h | 1.26 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.72 | MC |
| SRR358791 | seedling | wt | 1.18 | MC |
| SRR358792 | seedling | wt | 1.17 | MC |
| SRR358793 | seedling | wt | 1.88 | MC |
| SRR358794 | seedling | wt | 1.27 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.37 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.10 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 6.63 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.26 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.70 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.28 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.75 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.24 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 1.12 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 1.24 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 2.38 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.45 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.92 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 1.35 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.63 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.10 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.73 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.93 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.81 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 4.71 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.42 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 4.72 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 4.01 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 6.05 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.57 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 5.70 | MC |