| SRR358796 | callus | wt | 1.41 | MC |
| SRR358797 | callus | wt | 1.09 | MC |
| SRR5560727 | caryopsis | wild_type | 1.20 | MC |
| SRR5560728 | caryopsis | wild_type | 0.90 | MC |
| SRR5560729 | caryopsis | wild_type | 1.67 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.68 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.19 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.75 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.46 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 2.89 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 3.25 | MC |
| SRR2338869 | endosprem | high_temperature | 0.52 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.58 | MC |
| SRR1213691 | flower | wt | 0.52 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.88 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.66 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.72 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.73 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.85 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.77 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.70 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.72 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.87 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.83 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.58 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.69 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.67 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.81 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.50 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.71 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.02 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.87 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.54 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.60 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.79 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.62 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.40 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.64 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.69 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.59 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.43 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.50 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.69 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.50 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.69 | MC |
| SRR1761528 | leaf | drought | 0.51 | MC |
| SRR1761529 | leaf | drought | 0.68 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.82 | MC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.47 | MC |
| SRR6417968 | leaf | H2O_control | 0.43 | MC |
| SRR6417969 | leaf | H2O_control | 0.40 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.16 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 1.11 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.38 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.94 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 1.39 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.39 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.74 | MC |
| SRR8611901 | leaf | Non-inoculated | 0.70 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.79 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.37 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.40 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.49 | MC |
| SRR6168975 | leaf | none (control) | 4.01 | MC |
| SRR6168979 | leaf | none (control) | 1.42 | MC |
| SRR6168980 | leaf | none (control) | 1.45 | MC |
| SRR6168981 | leaf | none (control) | 1.61 | MC |
| SRR8582891 | panicle | PM | 0.55 | MC |
| SRR8582893 | panicle | PM | 0.31 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.23 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.37 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 1.46 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 1.17 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.97 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.70 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 2.20 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 3.13 | MC |
| SRR5126147 | root | "mock,1_day" | 1.12 | MC |
| SRR5126148 | root | "mock,1_day" | 1.28 | MC |
| SRR5126149 | root | "mock,1_day" | 1.06 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.82 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.69 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.45 | MC |
| SRR5126153 | root | "mock,7_days" | 0.83 | MC |
| SRR5126155 | root | "mock,7_days" | 0.64 | MC |
| SRR5126157 | root | "mock,7_days" | 0.50 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.52 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.48 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.86 | MC |
| SRR5126165 | root | "mock,14_days" | 0.53 | MC |
| SRR5126167 | root | "mock,14_days" | 0.34 | MC |
| SRR5126169 | root | "mock,14_days" | 0.83 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.74 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.89 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.95 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.49 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.46 | MC |
| SRR6441555 | seedling | wild_type | 0.39 | MC |
| SRR2154087 | seedling | wt | 0.61 | MC |
| SRR3098741 | seedling | wt | 0.34 | MC |
| SRR3098742 | seedling | wt | 0.69 | MC |
| SRR3098743 | seedling | wt | 0.27 | MC |
| SRR2857721 | seedling | drought_stress_6h | 0.66 | MC |
| SRR1944583 | seedling | no_treatment | 0.67 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 2.75 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.83 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.02 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 5.78 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 13.34 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 9.60 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.26 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.93 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.31 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.71 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 5.12 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 1.33 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 1.23 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 1.72 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.61 | MC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.31 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.71 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.31 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.35 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.37 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.34 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.53 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.36 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.53 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.45 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.44 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.43 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.84 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.63 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.56 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.38 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.88 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 1.16 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 1.06 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.15 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.98 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 1.13 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.59 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.91 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 1.85 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.43 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.59 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.67 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.70 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.73 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.83 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.58 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.38 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 1.99 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 1.96 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 1.87 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 2.35 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 2.15 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.27 | MC |