| SRR4457249 | 2nd_leaf | DAH4 | 0.88 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 1.52 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.56 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.95 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 1.41 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 3.09 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 1.17 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 2.13 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 1.71 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 2.64 | MC |
| SRR4457259 | 2nd_leaf | DAH28 | 2.81 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 3.45 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 4.43 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 2.34 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 2.89 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 5.40 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 5.09 | MC |
| SRR3745125 | anther | wt | 1.41 | MC |
| SRR3745126 | anther | wt | 1.05 | MC |
| SRR3745127 | anther | wt | 1.37 | MC |
| SRR6320498 | carpel | wt | 2.03 | MC |
| SRR5560727 | caryopsis | wild_type | 0.92 | MC |
| SRR5560728 | caryopsis | wild_type | 0.31 | MC |
| SRR5560729 | caryopsis | wild_type | 2.66 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.29 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 1.20 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.50 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 3.55 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.69 | MC |
| SRR2338868 | endosprem | high_temperature | 1.71 | MC |
| SRR976168 | flag_leaf | wild_type | 1.77 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.62 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.11 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.76 | MC |
| SRR4457234 | flag_leaf | DAH12 | 1.75 | MC |
| SRR4457235 | flag_leaf | DAH12 | 1.57 | MC |
| SRR4457236 | flag_leaf | DAH12 | 2.10 | MC |
| SRR4457237 | flag_leaf | DAH20 | 1.52 | MC |
| SRR4457238 | flag_leaf | DAH20 | 1.08 | MC |
| SRR4457239 | flag_leaf | DAH20 | 2.87 | MC |
| SRR4457240 | flag_leaf | DAH28 | 3.22 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.68 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.87 | MC |
| SRR4457245 | flag_leaf | DAH36 | 2.44 | MC |
| SRR4457246 | flag_leaf | DAH44 | 3.79 | MC |
| SRR1213691 | flower | wt | 1.06 | MC |
| SRR8060836 | leaf | wild_type | 0.98 | MC |
| SRR8060837 | leaf | wild_type | 1.53 | MC |
| SRR8240818 | leaf | wild_type | 1.22 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.95 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 2.07 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 1.01 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 3.72 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 4.18 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 2.30 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 2.23 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 4.32 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 1.99 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 1.89 | MC |
| SRR5856927 | leaf | control | 0.51 | MC |
| SRR5856930 | leaf | salt | 1.86 | MC |
| SRR5856934 | leaf | control | 1.35 | MC |
| SRR5856935 | leaf | control | 2.31 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 3.62 | MC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 5.44 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 3.82 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.54 | MC |
| SRR8582888 | panicle | AM | 0.99 | MC |
| SRR8582889 | panicle | AM | 0.68 | MC |
| SRR8582890 | panicle | AM | 0.56 | MC |
| SRR8582891 | panicle | PM | 1.49 | MC |
| SRR8582892 | panicle | PM | 0.74 | MC |
| SRR8582893 | panicle | PM | 1.43 | MC |
| SRR5110429 | panicle | Dawn | 1.01 | MC |
| SRR5110431 | panicle | Dawn | 0.89 | MC |
| SRR5110432 | panicle | Dawn | 0.81 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 2.79 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.92 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.36 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 1.13 | MC |
| SRR5110437 | panicle | Dawn + 7h | 1.90 | MC |
| SRR5110438 | panicle | Dawn + 7h | 1.62 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.63 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.93 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.87 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 1.76 | MC |
| SRR5110445 | panicle | Dusk | 1.69 | MC |
| SRR5110446 | panicle | Dusk | 1.22 | MC |
| SRR5110447 | panicle | Dusk | 1.84 | MC |
| SRR5110448 | panicle | Dusk | 2.77 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.67 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.51 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.67 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 1.79 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.92 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 3.54 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.97 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.56 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.33 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.14 | MC |
| SRR5126147 | root | "mock,1_day" | 1.26 | MC |
| SRR5126148 | root | "mock,1_day" | 1.04 | MC |
| SRR5126149 | root | "mock,1_day" | 2.41 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.33 | MC |
| SRR5126153 | root | "mock,7_days" | 0.30 | MC |
| SRR5126155 | root | "mock,7_days" | 1.34 | MC |
| SRR5126157 | root | "mock,7_days" | 1.20 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 1.58 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.53 | MC |
| SRR5126165 | root | "mock,14_days" | 1.93 | MC |
| SRR5126167 | root | "mock,14_days" | 2.58 | MC |
| SRR5126169 | root | "mock,14_days" | 0.73 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.60 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.91 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.70 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.54 | MC |
| SRR1213694 | root | wt | 1.56 | MC |
| SRR6502091 | root | 100 mM NaCl | 3.33 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.96 | MC |
| SRR6502093 | root | 100 mM NaCl | 2.81 | MC |
| SRR6502094 | root | control | 2.42 | MC |
| SRR6502096 | root | control | 2.99 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.54 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.83 | MC |
| SRR1740432 | root_elongation_zone | wt | 3.12 | MC |
| SRR1740428 | root_meristematic_zone | wt | 4.08 | MC |
| SRR1740429 | root_meristematic_zone | wt | 3.15 | MC |
| SRR6441554 | seedling | wild_type | 0.69 | MC |
| SRR6441555 | seedling | wild_type | 0.65 | MC |
| SRR2154086 | seedling | wt | 0.93 | MC |
| SRR2154082 | seedling | wt | 1.47 | MC |
| SRR2154084 | seedling | wt | 0.69 | MC |
| SRR2154085 | seedling | wt | 2.70 | MC |
| SRR2154087 | seedling | wt | 2.69 | MC |
| SRR3098742 | seedling | wt | 0.94 | MC |
| SRR3098743 | seedling | wt | 1.72 | MC |
| SRR2857719 | seedling | drought_stress_0h | 2.11 | MC |
| SRR2857720 | seedling | drought_stress_1h | 2.12 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.11 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 3.07 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.62 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 10.53 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 5.88 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.48 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 3.13 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.90 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 3.24 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.56 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 2.82 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 1.17 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 2.00 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.58 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.43 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.57 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.88 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.50 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.00 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.01 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.93 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.09 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 10.36 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.35 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.94 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.44 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.33 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 5.02 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 6.95 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 6.87 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 7.41 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 5.84 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 2.74 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.49 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 1.04 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 2.19 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 2.07 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.71 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.59 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.39 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 2.08 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.31 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.95 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.43 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.90 | MC |