| SRR4457249 | 2nd_leaf | DAH4 | 1.52 | MC |
| SRR4457250 | 2nd_leaf | DAH4 | 2.06 | MC |
| SRR4457251 | 2nd_leaf | DAH4 | 1.23 | MC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.82 | MC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.74 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.57 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.66 | MC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.54 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.80 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.35 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.98 | MC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.91 | MC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.87 | MC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.75 | MC |
| SRR358795 | callus | wt | 1.35 | MC |
| SRR358797 | callus | wt | 1.89 | MC |
| SRR358798 | callus | wt | 0.99 | MC |
| SRR5560727 | caryopsis | wild_type | 0.67 | MC |
| SRR5560728 | caryopsis | wild_type | 0.80 | MC |
| SRR5560729 | caryopsis | wild_type | 0.84 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 1.00 | MC |
| SRR7265410 | coleoptile | 3dN | 2.43 | MC |
| SRR7265415 | coleoptile | 4dN | 2.93 | MC |
| SRR7265417 | coleoptile | 4dN | 3.93 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.40 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.74 | MC |
| SRR7265374 | embryo | dry seed 0 h | 0.68 | MC |
| SRR7265376 | embryo | 1hA | 3.14 | MC |
| SRR7265379 | embryo | 1hN | 2.00 | MC |
| SRR7265380 | embryo | 1hN | 2.32 | MC |
| SRR7265381 | embryo | 1hN | 2.84 | MC |
| SRR7265382 | embryo | 3hA | 3.97 | MC |
| SRR7265385 | embryo | 3hN | 3.74 | MC |
| SRR7265389 | embryo | 12hA | 2.30 | MC |
| SRR7265391 | embryo | 12hN | 2.76 | MC |
| SRR7265392 | embryo | 12hN | 4.07 | MC |
| SRR7265393 | embryo | 12hN | 2.20 | MC |
| SRR7265395 | embryo | 24hA | 4.97 | MC |
| SRR7265397 | embryo | 24hN | 5.15 | MC |
| SRR7265398 | embryo | 24hN | 3.45 | MC |
| SRR2338869 | endosprem | high_temperature | 0.62 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.98 | MC |
| SRR4457232 | flag_leaf | DAH4 | 1.23 | MC |
| SRR4457233 | flag_leaf | DAH4 | 1.45 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.39 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.41 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.39 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.26 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.44 | MC |
| SRR4457240 | flag_leaf | DAH28 | 1.20 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.62 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.58 | MC |
| SRR4457243 | flag_leaf | DAH36 | 1.95 | MC |
| SRR4457244 | flag_leaf | DAH36 | 1.29 | MC |
| SRR4457245 | flag_leaf | DAH36 | 1.25 | MC |
| SRR4457246 | flag_leaf | DAH44 | 0.53 | MC |
| SRR4457248 | flag_leaf | DAH44 | 0.91 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.39 | MC |
| SRR1213691 | flower | wt | 0.62 | MC |
| SRR8240824 | leaf | wild_type | 0.28 | MC |
| SRR8240826 | leaf | wild_type | 0.23 | MC |
| SRR8240819 | leaf | wild_type | 0.24 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.33 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.43 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.51 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.53 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.84 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.57 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.42 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.50 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.82 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.47 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.45 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.33 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.40 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.61 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.05 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.81 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.05 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.49 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.57 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.56 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.62 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.38 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.41 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.37 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.86 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.50 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.81 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.49 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.50 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.81 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.49 | MC |
| SRR1761529 | leaf | drought | 0.50 | MC |
| SRR1761530 | leaf | control | 0.81 | MC |
| SRR1761531 | leaf | control | 1.49 | MC |
| SRR504365 | leaf | wt | 0.36 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.30 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.53 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.39 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.24 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.34 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.32 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.31 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.26 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.21 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.62 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.62 | MC |
| SRR1213692 | leaf | wt | 0.65 | MC |
| SRR1213693 | leaf | wt | 0.81 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.69 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 0.61 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 1.22 | MC |
| SRR6502088 | leaf | control | 0.41 | MC |
| SRR6502090 | leaf | control | 0.45 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.71 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 1.09 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.51 | MC |
| SRR6502100 | leaf | control | 0.38 | MC |
| SRR6502101 | leaf | control | 0.41 | MC |
| SRR6502102 | leaf | control | 0.39 | MC |
| SRR6168979 | leaf | none (control) | 0.20 | MC |
| SRR6168981 | leaf | none (control) | 0.44 | MC |
| SRR8582888 | panicle | AM | 0.42 | MC |
| SRR8582889 | panicle | AM | 0.20 | MC |
| SRR8582890 | panicle | AM | 0.54 | MC |
| SRR8582891 | panicle | PM | 1.13 | MC |
| SRR8582892 | panicle | PM | 2.00 | MC |
| SRR8582893 | panicle | PM | 0.54 | MC |
| SRR4947496 | root | control | 1.02 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.26 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.20 | MC |
| SRR1633182 | panicle | WT | 3.26 | MC |
| SRR1633185 | panicle | WT | 4.06 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.79 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.41 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.47 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.62 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 1.02 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 0.83 | MC |
| SRR5126147 | root | "mock,1_day" | 0.41 | MC |
| SRR5126148 | root | "mock,1_day" | 0.55 | MC |
| SRR5126149 | root | "mock,1_day" | 0.52 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.92 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.22 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.99 | MC |
| SRR5126157 | root | "mock,7_days" | 0.83 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.56 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.98 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.14 | MC |
| SRR5126165 | root | "mock,14_days" | 0.49 | MC |
| SRR5126167 | root | "mock,14_days" | 2.03 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.58 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 1.04 | MC |
| SRR1213694 | root | wt | 1.19 | MC |
| SRR1213695 | root | wt | 1.40 | MC |
| SRR4947480 | root | control | 0.84 | MC |
| SRR4947481 | root | control | 2.99 | MC |
| SRR4947484 | root | Al | 0.79 | MC |
| SRR4947485 | root | Al | 0.81 | MC |
| SRR4947489 | root | control | 1.01 | MC |
| SRR4947492 | root | Al | 0.77 | MC |
| SRR4947493 | root | Al | 0.95 | MC |
| SRR4947497 | root | control | 1.46 | MC |
| SRR4947501 | root | Al | 1.63 | MC |
| SRR4947504 | root | control | 1.87 | MC |
| SRR4947505 | root | control | 2.80 | MC |
| SRR4947508 | root | Al | 0.56 | MC |
| SRR4947509 | root | Al | 0.87 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.55 | MC |
| SRR6502092 | root | 100 mM NaCl | 0.66 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.73 | MC |
| SRR6502096 | root | control | 0.43 | MC |
| SRR6502103 | root | 100 mM NaCl | 0.94 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.73 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.62 | MC |
| SRR6502106 | root | control | 1.12 | MC |
| SRR6502107 | root | control | 0.36 | MC |
| SRR6502108 | root | control | 0.60 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.43 | MC |
| SRR6441555 | seedling | wild_type | 0.30 | MC |
| SRR2154086 | seedling | wt | 1.12 | MC |
| SRR2154082 | seedling | wt | 0.36 | MC |
| SRR2154083 | seedling | wt | 0.41 | MC |
| SRR2154085 | seedling | wt | 0.65 | MC |
| SRR2154087 | seedling | wt | 1.03 | MC |
| SRR3098741 | seedling | wt | 0.58 | MC |
| SRR3098742 | seedling | wt | 0.64 | MC |
| SRR3098743 | seedling | wt | 0.63 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.44 | MC |
| SRR1944583 | seedling | no_treatment | 0.41 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.84 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 3.92 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 4.45 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.61 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.35 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.38 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.76 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.45 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.42 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.45 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.43 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.67 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.07 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.60 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.96 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.69 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.41 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.51 | MC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.33 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.52 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.10 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 0.92 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.87 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.94 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 1.49 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 0.87 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 0.79 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.53 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.11 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 0.74 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 0.80 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 0.97 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.44 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.65 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 1.19 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 0.73 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 0.88 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.09 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 1.75 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.77 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.26 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.59 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.53 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.87 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.70 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.51 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.69 | MC |