| SRR3745126 | anther | wt | 4.88 | MC |
| SRR3745127 | anther | wt | 5.31 | MC |
| SRR358795 | callus | wt | 5.21 | MC |
| SRR358796 | callus | wt | 4.22 | MC |
| SRR358797 | callus | wt | 5.47 | MC |
| SRR358798 | callus | wt | 3.77 | MC |
| SRR6320473 | carpel | wt | 1.46 | MC |
| SRR5560727 | caryopsis | wild_type | 3.74 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.65 | MC |
| SRR4947495 | root | control | 1.54 | MC |
| SRR7265400 | coleoptile | 2dA | 2.84 | MC |
| SRR7265401 | coleoptile | 2dA | 2.58 | MC |
| SRR7265402 | coleoptile | 2dA | 2.79 | MC |
| SRR7265403 | coleoptile | 2dN | 3.04 | MC |
| SRR7265404 | coleoptile | 2dN | 2.64 | MC |
| SRR7265405 | coleoptile | 2dN | 2.34 | MC |
| SRR7265406 | coleoptile | 3dA | 2.02 | MC |
| SRR7265407 | coleoptile | 3dA | 2.05 | MC |
| SRR7265408 | coleoptile | 3dA | 1.34 | MC |
| SRR7265409 | coleoptile | 3dN | 4.23 | MC |
| SRR7265410 | coleoptile | 3dN | 2.99 | MC |
| SRR7265411 | coleoptile | 3dN | 3.35 | MC |
| SRR7265412 | coleoptile | 4dA | 0.86 | MC |
| SRR7265413 | coleoptile | 4dA | 2.86 | MC |
| SRR7265414 | coleoptile | 4dA | 2.75 | MC |
| SRR7265415 | coleoptile | 4dN | 3.59 | MC |
| SRR7265416 | coleoptile | 4dN | 2.64 | MC |
| SRR7265417 | coleoptile | 4dN | 3.10 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.63 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.79 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 2.99 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.92 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.94 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.67 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.49 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.70 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.63 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.51 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 2.28 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 2.33 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.33 | MC |
| SRR7265373 | embryo | dry seed 0 h | 1.01 | MC |
| SRR7265374 | embryo | dry seed 0 h | 1.16 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.53 | MC |
| SRR7265376 | embryo | 1hA | 0.43 | MC |
| SRR7265377 | embryo | 1hA | 0.37 | MC |
| SRR7265378 | embryo | 1hA | 0.54 | MC |
| SRR7265379 | embryo | 1hN | 0.71 | MC |
| SRR7265380 | embryo | 1hN | 0.50 | MC |
| SRR7265381 | embryo | 1hN | 0.74 | MC |
| SRR7265383 | embryo | 3hA | 0.57 | MC |
| SRR7265384 | embryo | 3hA | 0.33 | MC |
| SRR7265386 | embryo | 3hN | 0.39 | MC |
| SRR7265387 | embryo | 3hN | 0.57 | MC |
| SRR7265388 | embryo | 12hA | 2.57 | MC |
| SRR7265389 | embryo | 12hA | 3.48 | MC |
| SRR7265390 | embryo | 12hA | 2.44 | MC |
| SRR7265391 | embryo | 12hN | 2.24 | MC |
| SRR7265392 | embryo | 12hN | 2.05 | MC |
| SRR7265393 | embryo | 12hN | 2.71 | MC |
| SRR7265394 | embryo | 24hA | 3.16 | MC |
| SRR7265395 | embryo | 24hA | 3.91 | MC |
| SRR7265396 | embryo | 24hA | 3.81 | MC |
| SRR7265397 | embryo | 24hN | 2.76 | MC |
| SRR7265398 | embryo | 24hN | 2.34 | MC |
| SRR7265399 | embryo | 24hN | 2.89 | MC |
| SRR976168 | flag_leaf | wild_type | 0.71 | MC |
| SRR4457232 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.39 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.30 | MC |
| SRR8060836 | leaf | wild_type | 0.30 | MC |
| SRR8240824 | leaf | wild_type | 1.35 | MC |
| SRR8240825 | leaf | wild_type | 0.58 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.14 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.65 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.07 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.31 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.19 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.23 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.89 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.74 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.30 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.78 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.83 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.07 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.00 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.91 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 1.38 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.91 | MC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 1.04 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.67 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.79 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.08 | MC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.50 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.79 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.63 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.02 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 1.01 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.69 | MC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.49 | MC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 1.05 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.69 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 1.20 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.89 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.95 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.99 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 1.12 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.57 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 1.21 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.88 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.57 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 1.21 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.88 | MC |
| SRR1761529 | leaf | drought | 0.57 | MC |
| SRR1761530 | leaf | control | 1.21 | MC |
| SRR1761531 | leaf | control | 0.88 | MC |
| SRR504365 | leaf | wt | 0.59 | MC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.81 | MC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.62 | MC |
| SRR6417967 | leaf | H2O_control | 0.56 | MC |
| SRR6417968 | leaf | H2O_control | 0.47 | MC |
| SRR6417969 | leaf | H2O_control | 0.49 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.53 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.53 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 0.39 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.60 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.42 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.42 | MC |
| SRR3209776 | leaf | Drought;Short_Day | 0.37 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.41 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.58 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.28 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 0.60 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.00 | MC |
| SRR8611901 | leaf | Non-inoculated | 2.62 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.26 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 1.38 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 1.58 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 1.60 | MC |
| SRR1213692 | leaf | wt | 0.90 | MC |
| SRR1213693 | leaf | wt | 0.38 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 3.01 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 2.04 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.76 | MC |
| SRR6502088 | leaf | control | 1.78 | MC |
| SRR6502089 | leaf | control | 1.52 | MC |
| SRR6502090 | leaf | control | 0.96 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 3.28 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 4.56 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 1.96 | MC |
| SRR6502100 | leaf | control | 1.98 | MC |
| SRR6502101 | leaf | control | 1.48 | MC |
| SRR6502102 | leaf | control | 1.94 | MC |
| SRR5856933 | leaf | control | 1.14 | MC |
| SRR5856934 | leaf | control | 1.03 | MC |
| SRR5856935 | leaf | control | 1.04 | MC |
| SRR5856936 | leaf | salt | 0.74 | MC |
| SRR5856937 | leaf | salt | 0.61 | MC |
| SRR5856938 | leaf | salt | 0.77 | MC |
| SRR6168974 | leaf | none (control) | 3.33 | MC |
| SRR6168975 | leaf | none (control) | 1.85 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 6.35 | MC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.49 | MC |
| SRR6168980 | leaf | none (control) | 0.88 | MC |
| SRR6168981 | leaf | none (control) | 1.15 | MC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 1.15 | MC |
| SRR8582888 | panicle | AM | 1.52 | MC |
| SRR8582889 | panicle | AM | 0.86 | MC |
| SRR8582890 | panicle | AM | 2.08 | MC |
| SRR8582891 | panicle | PM | 1.90 | MC |
| SRR8582892 | panicle | PM | 2.00 | MC |
| SRR8582893 | panicle | PM | 1.54 | MC |
| SRR5110429 | panicle | Dawn | 1.41 | MC |
| SRR5110430 | panicle | Dawn | 0.75 | MC |
| SRR5110431 | panicle | Dawn | 1.39 | MC |
| SRR5110432 | panicle | Dawn | 1.92 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.82 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.49 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.81 | MC |
| SRR5110437 | panicle | Dawn + 7h | 0.69 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.90 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.93 | MC |
| SRR5110440 | panicle | Dawn + 7h | 0.92 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.30 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.81 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.75 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.91 | MC |
| SRR5110445 | panicle | Dusk | 0.87 | MC |
| SRR5110446 | panicle | Dusk | 1.13 | MC |
| SRR5110447 | panicle | Dusk | 0.82 | MC |
| SRR5110448 | panicle | Dusk | 1.60 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.19 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.60 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.02 | MC |
| SRR5110452 | panicle | Dawn + 14h | 1.42 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.79 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.22 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.82 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.97 | MC |
| SRR5110457 | panicle | Dawn + 21h | 0.76 | MC |
| SRR5110458 | panicle | Dawn + 21h | 1.11 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.23 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.40 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.23 | MC |
| SRR5126149 | root | "mock,1_day" | 4.68 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 3.22 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 3.65 | MC |
| SRR5126167 | root | "mock,14_days" | 3.88 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 2.71 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 3.87 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.46 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 1.11 | MC |
| SRR1213694 | root | wt | 0.86 | MC |
| SRR1213695 | root | wt | 0.49 | MC |
| SRR4947478 | root | control | 1.00 | MC |
| SRR4947479 | root | control | 0.93 | MC |
| SRR4947482 | root | Al | 0.52 | MC |
| SRR4947483 | root | Al | 1.57 | MC |
| SRR4947487 | root | control | 1.66 | MC |
| SRR4947490 | root | Al | 1.41 | MC |
| SRR4947491 | root | Al | 1.25 | MC |
| SRR4947494 | root | control | 1.15 | MC |
| SRR4947498 | root | Al | 1.77 | MC |
| SRR4947499 | root | Al | 0.69 | MC |
| SRR4947502 | root | control | 1.93 | MC |
| SRR4947503 | root | control | 1.69 | MC |
| SRR4947506 | root | Al | 0.76 | MC |
| SRR4947507 | root | Al | 1.22 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.05 | MC |
| SRR1740431 | root_elongation_zone | wt | 1.88 | MC |
| SRR1740432 | root_elongation_zone | wt | 3.49 | MC |
| SRR1740433 | root_elongation_zone | wt | 3.07 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.23 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.18 | MC |
| SRR1740430 | root_meristematic_zone | wt | 1.49 | MC |
| SRR6441555 | seedling | wild_type | 2.87 | MC |
| SRR2154082 | seedling | wt | 0.95 | MC |
| SRR2154083 | seedling | wt | 0.60 | MC |
| SRR2154084 | seedling | wt | 0.97 | MC |
| SRR2154085 | seedling | wt | 4.06 | MC |
| SRR3098743 | seedling | wt | 2.58 | MC |
| SRR2857721 | seedling | drought_stress_6h | 2.27 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.61 | MC |
| SRR1944583 | seedling | no_treatment | 4.29 | MC |
| SRR358791 | seedling | wt | 1.44 | MC |
| SRR358792 | seedling | wt | 1.21 | MC |
| SRR358793 | seedling | wt | 0.49 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.09 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 6.31 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.97 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.00 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.13 | MC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.25 | MC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 0.26 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 0.21 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.22 | MC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.25 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.27 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 1.88 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 2.04 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.46 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.71 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.05 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.58 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 2.41 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 2.97 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.81 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 7.16 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 6.69 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 6.28 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 8.20 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 7.73 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 7.44 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 6.17 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 6.56 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 7.69 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 6.63 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 13.95 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 3.37 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 3.44 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 5.81 | MC |
| SRR1617554 | shoot_apical_meristem | no collect | 5.10 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 5.01 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 4.99 | MC |
| SRR1617558 | shoot_apical_meristem | no collect | 4.64 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 4.30 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.24 | MC |