| SRR358797 | callus | wt | 0.93 | MC |
| SRR358798 | callus | wt | 0.88 | MC |
| SRR5560727 | caryopsis | wild_type | 0.60 | MC |
| SRR5560728 | caryopsis | wild_type | 0.67 | MC |
| SRR5560729 | caryopsis | wild_type | 0.78 | MC |
| SRR7265403 | coleoptile | 2dN | 0.70 | MC |
| SRR7265404 | coleoptile | 2dN | 0.30 | MC |
| SRR7265405 | coleoptile | 2dN | 0.54 | MC |
| SRR7265409 | coleoptile | 3dN | 1.31 | MC |
| SRR7265410 | coleoptile | 3dN | 1.07 | MC |
| SRR7265411 | coleoptile | 3dN | 1.01 | MC |
| SRR7265415 | coleoptile | 4dN | 2.15 | MC |
| SRR7265416 | coleoptile | 4dN | 2.22 | MC |
| SRR7265417 | coleoptile | 4dN | 1.89 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.73 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 1.01 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.65 | MC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.92 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.79 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.67 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.69 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.81 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.58 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.96 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.99 | MC |
| SRR1213690 | flower | wt(flower buds) | 1.38 | MC |
| SRR1213691 | flower | wt | 3.47 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.39 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.36 | MC |
| SRR1213692 | leaf | wt | 0.42 | MC |
| SRR5856934 | leaf | control | 0.21 | MC |
| SRR5856935 | leaf | control | 0.22 | MC |
| SRR5856936 | leaf | salt | 0.16 | MC |
| SRR5856938 | leaf | salt | 0.19 | MC |
| SRR5110429 | panicle | Dawn | 0.56 | MC |
| SRR5110430 | panicle | Dawn | 0.89 | MC |
| SRR5110431 | panicle | Dawn | 0.89 | MC |
| SRR5110432 | panicle | Dawn | 0.57 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.51 | MC |
| SRR5110438 | panicle | Dawn + 7h | 0.47 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.55 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.46 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.34 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.83 | MC |
| SRR5110445 | panicle | Dusk | 0.86 | MC |
| SRR5110446 | panicle | Dusk | 0.52 | MC |
| SRR5110447 | panicle | Dusk | 0.45 | MC |
| SRR5110448 | panicle | Dusk | 0.64 | MC |
| SRR5110449 | panicle | Dawn + 14h | 0.97 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.58 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.51 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.37 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.42 | MC |
| SRR5110460 | panicle | Dawn + 21h | 0.41 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.34 | MC |
| SRR1633182 | panicle | WT | 0.89 | MC |
| SRR1633185 | panicle | WT | 0.96 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.40 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.36 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.64 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.55 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.93 | MC |
| SRR1213694 | root | wt | 0.23 | MC |
| SRR1213695 | root | wt | 0.26 | MC |
| SRR4947483 | root | Al | 0.70 | MC |
| SRR4947484 | root | Al | 0.53 | MC |
| SRR4947497 | root | control | 0.55 | MC |
| SRR4947500 | root | Al | 0.65 | MC |
| SRR4947502 | root | control | 0.58 | MC |
| SRR4947504 | root | control | 0.50 | MC |
| SRR4947506 | root | Al | 0.66 | MC |
| SRR4947507 | root | Al | 0.63 | MC |
| SRR4947508 | root | Al | 0.78 | MC |
| SRR6502106 | root | control | 0.34 | MC |
| SRR2154083 | seedling | wt | 0.46 | MC |
| SRR2154084 | seedling | wt | 0.37 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 4.35 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 6.23 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.72 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.08 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 7.71 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.34 | MC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.36 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.68 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.36 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.48 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 0.87 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 0.94 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 0.87 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 1.18 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 0.61 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.78 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.68 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.72 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.29 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.98 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.99 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.05 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.35 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.72 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.85 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.89 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.65 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.91 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.36 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.45 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.39 | MC |