| SRR4457253 | 2nd_leaf | DAH12 | 0.38 | MC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.45 | MC |
| SRR4457255 | 2nd_leaf | DAH20 | 2.51 | MC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.69 | MC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.72 | MC |
| SRR4457260 | 2nd_leaf | DAH28 | 1.02 | MC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.86 | MC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.86 | MC |
| SRR358796 | callus | wt | 7.34 | MC |
| SRR358797 | callus | wt | 6.67 | MC |
| SRR358798 | callus | wt | 5.73 | MC |
| SRR5560727 | caryopsis | wild_type | 2.32 | MC |
| SRR5560728 | caryopsis | wild_type | 0.89 | MC |
| SRR5560729 | caryopsis | wild_type | 0.66 | MC |
| SRR4947495 | root | control | 3.31 | MC |
| SRR7265400 | coleoptile | 2dA | 1.29 | MC |
| SRR7265401 | coleoptile | 2dA | 0.56 | MC |
| SRR7265402 | coleoptile | 2dA | 0.51 | MC |
| SRR7265403 | coleoptile | 2dN | 1.14 | MC |
| SRR7265405 | coleoptile | 2dN | 1.88 | MC |
| SRR7265406 | coleoptile | 3dA | 0.69 | MC |
| SRR7265416 | coleoptile | 4dN | 0.71 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 1.47 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 0.82 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 0.71 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.29 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.70 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.41 | MC |
| SRR7265382 | embryo | 3hA | 0.51 | MC |
| SRR7265383 | embryo | 3hA | 0.42 | MC |
| SRR7265388 | embryo | 12hA | 1.11 | MC |
| SRR7265389 | embryo | 12hA | 3.79 | MC |
| SRR7265390 | embryo | 12hA | 2.42 | MC |
| SRR7265391 | embryo | 12hN | 4.69 | MC |
| SRR7265392 | embryo | 12hN | 3.37 | MC |
| SRR7265393 | embryo | 12hN | 4.24 | MC |
| SRR7265395 | embryo | 24hA | 1.62 | MC |
| SRR7265396 | embryo | 24hA | 1.81 | MC |
| SRR7265398 | embryo | 24hN | 2.90 | MC |
| SRR7265399 | embryo | 24hN | 2.04 | MC |
| SRR4457231 | flag_leaf | DAH4 | 0.27 | MC |
| SRR4457239 | flag_leaf | DAH20 | 1.29 | MC |
| SRR4457241 | flag_leaf | DAH28 | 0.42 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.32 | MC |
| SRR8060835 | leaf | wild_type | 1.11 | MC |
| SRR8060836 | leaf | wild_type | 0.78 | MC |
| SRR8060837 | leaf | wild_type | 0.69 | MC |
| SRR8240825 | leaf | wild_type | 2.51 | MC |
| SRR8240819 | leaf | wild_type | 1.07 | MC |
| SRR8240820 | leaf | wild_type | 2.43 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 5.38 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.84 | MC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.96 | MC |
| SRR1761791 | leaf | "wild_type,control,2" | 1.14 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 5.38 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.84 | MC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.96 | MC |
| SRR1761783 | leaf | "wild_type,control,1" | 1.14 | MC |
| SRR1761528 | leaf | drought | 5.38 | MC |
| SRR1761529 | leaf | drought | 0.84 | MC |
| SRR1761530 | leaf | control | 0.96 | MC |
| SRR1761531 | leaf | control | 1.14 | MC |
| SRR504365 | leaf | wt | 0.89 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.52 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.79 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 1.24 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 2.52 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 3.15 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 3.39 | MC |
| SRR8611900 | leaf | Non-inoculated | 3.67 | MC |
| SRR8611902 | leaf | Non-inoculated | 2.50 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 3.51 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 2.29 | MC |
| SRR1213693 | leaf | wt | 0.31 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 4.27 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 3.34 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 4.49 | MC |
| SRR5856929 | leaf | control | 0.19 | MC |
| SRR5856930 | leaf | salt | 1.27 | MC |
| SRR5856931 | leaf | salt | 0.94 | MC |
| SRR5856932 | leaf | salt | 0.74 | MC |
| SRR5856936 | leaf | salt | 0.70 | MC |
| SRR5856937 | leaf | salt | 1.07 | MC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 1.20 | MC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 2.98 | MC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 2.59 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 3.06 | MC |
| SRR5110439 | panicle | Dawn + 7h | 3.70 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.43 | MC |
| SRR5126147 | root | "mock,1_day" | 1.77 | MC |
| SRR5126148 | root | "mock,1_day" | 1.89 | MC |
| SRR5126149 | root | "mock,1_day" | 1.75 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 1.88 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 1.12 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 3.76 | MC |
| SRR5126153 | root | "mock,7_days" | 0.28 | MC |
| SRR5126155 | root | "mock,7_days" | 0.93 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.67 | MC |
| SRR5126167 | root | "mock,14_days" | 2.03 | MC |
| SRR5126169 | root | "mock,14_days" | 0.96 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.43 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 4.90 | MC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.42 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 1.10 | MC |
| SRR1213695 | root | wt | 0.76 | MC |
| SRR4947478 | root | control | 1.44 | MC |
| SRR4947479 | root | control | 2.31 | MC |
| SRR4947482 | root | Al | 1.77 | MC |
| SRR4947483 | root | Al | 3.39 | MC |
| SRR4947487 | root | control | 4.34 | MC |
| SRR4947490 | root | Al | 3.53 | MC |
| SRR4947491 | root | Al | 2.36 | MC |
| SRR4947494 | root | control | 2.70 | MC |
| SRR4947499 | root | Al | 3.98 | MC |
| SRR4947506 | root | Al | 3.95 | MC |
| SRR6502094 | root | control | 2.28 | MC |
| SRR6502095 | root | control | 4.62 | MC |
| SRR6502096 | root | control | 2.64 | MC |
| SRR6502103 | root | 100 mM NaCl | 3.27 | MC |
| SRR6502104 | root | 100 mM NaCl | 1.34 | MC |
| SRR6502105 | root | 100 mM NaCl | 2.17 | MC |
| SRR6502106 | root | control | 1.62 | MC |
| SRR6502107 | root | control | 2.58 | MC |
| SRR6502108 | root | control | 2.56 | MC |
| SRR1740434 | root_differentiation_zone | wt | 1.37 | MC |
| SRR1740436 | root_differentiation_zone | wt | 1.41 | MC |
| SRR6441554 | seedling | wild_type | 0.21 | MC |
| SRR6441555 | seedling | wild_type | 0.66 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 3.02 | MC |
| SRR1944583 | seedling | no_treatment | 1.87 | MC |
| SRR358791 | seedling | wt | 4.96 | MC |
| SRR358792 | seedling | wt | 3.50 | MC |
| SRR358793 | seedling | wt | 4.63 | MC |
| SRR358794 | seedling | wt | 6.01 | MC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 3.11 | MC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 2.01 | MC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 4.44 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.72 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 1.28 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 3.26 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.90 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.89 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.61 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.50 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.35 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.54 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.15 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.33 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.02 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.33 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.69 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.83 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 3.60 | MC |