| SRR3745125 | anther | wt | 2.12 | MC |
| SRR3745126 | anther | wt | 2.56 | MC |
| SRR3745127 | anther | wt | 1.85 | MC |
| SRR358795 | callus | wt | 2.31 | MC |
| SRR358797 | callus | wt | 1.60 | MC |
| SRR358798 | callus | wt | 2.31 | MC |
| SRR5560729 | caryopsis | wild_type | 3.94 | MC |
| SRR4947495 | root | control | 1.01 | MC |
| SRR7265373 | embryo | dry seed 0 h | 0.44 | MC |
| SRR7265376 | embryo | 1hA | 0.35 | MC |
| SRR7265379 | embryo | 1hN | 0.32 | MC |
| SRR7265380 | embryo | 1hN | 0.35 | MC |
| SRR7265381 | embryo | 1hN | 0.49 | MC |
| SRR7265383 | embryo | 3hA | 4.77 | MC |
| SRR7265385 | embryo | 3hN | 1.44 | MC |
| SRR7265386 | embryo | 3hN | 1.21 | MC |
| SRR7265387 | embryo | 3hN | 1.10 | MC |
| SRR976168 | flag_leaf | wild_type | 1.35 | MC |
| SRR4457243 | flag_leaf | DAH36 | 0.57 | MC |
| SRR8060837 | leaf | wild_type | 0.18 | MC |
| SRR8240824 | leaf | wild_type | 2.18 | MC |
| SRR8240818 | leaf | wild_type | 0.44 | MC |
| SRR8240819 | leaf | wild_type | 0.49 | MC |
| SRR8240820 | leaf | wild_type | 0.27 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 2.79 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 4.24 | MC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 6.11 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.99 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 5.67 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 3.81 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 2.67 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 6.23 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.62 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 2.96 | MC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 1.75 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.87 | MC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 6.33 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.07 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 3.32 | MC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 2.92 | MC |
| SRR1761788 | leaf | "wild_type,drought,2" | 4.72 | MC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.83 | MC |
| SRR1761780 | leaf | "wild_type,drought,1" | 4.72 | MC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.83 | MC |
| SRR1761528 | leaf | drought | 4.72 | MC |
| SRR1761529 | leaf | drought | 0.83 | MC |
| SRR3209771 | leaf | Drought;Long_Day | 2.33 | MC |
| SRR3209772 | leaf | Drought;Long_Day | 0.79 | MC |
| SRR3209775 | leaf | Drought;Short_Day | 0.37 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 1.45 | MC |
| SRR3209778 | leaf | Drought;Long_Day | 0.32 | MC |
| SRR3209780 | leaf | Drought;Short_Day | 1.34 | MC |
| SRR8611900 | leaf | Non-inoculated | 0.69 | MC |
| SRR8611901 | leaf | Non-inoculated | 1.04 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.76 | MC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 2.30 | MC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 3.26 | MC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 2.41 | MC |
| SRR1213692 | leaf | wt | 1.10 | MC |
| SRR1213693 | leaf | wt | 2.86 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.82 | MC |
| SRR6502086 | leaf | 100 mM NaCl | 1.21 | MC |
| SRR6502088 | leaf | control | 2.25 | MC |
| SRR6502089 | leaf | control | 3.21 | MC |
| SRR6502090 | leaf | control | 1.43 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 1.95 | MC |
| SRR6502098 | leaf | 100 mM NaCl | 2.41 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 2.39 | MC |
| SRR6502100 | leaf | control | 4.04 | MC |
| SRR6502101 | leaf | control | 2.72 | MC |
| SRR6502102 | leaf | control | 1.84 | MC |
| SRR5856927 | leaf | control | 2.04 | MC |
| SRR5856933 | leaf | control | 2.34 | MC |
| SRR5856935 | leaf | control | 1.59 | MC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 1.40 | MC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 2.81 | MC |
| SRR6168973 | leaf | none (control) | 3.38 | MC |
| SRR6168974 | leaf | none (control) | 3.07 | MC |
| SRR6168975 | leaf | none (control) | 1.35 | MC |
| SRR8582888 | panicle | AM | 0.97 | MC |
| SRR8582889 | panicle | AM | 0.90 | MC |
| SRR8582890 | panicle | AM | 2.04 | MC |
| SRR8582892 | panicle | PM | 2.61 | MC |
| SRR5110429 | panicle | Dawn | 2.84 | MC |
| SRR5110430 | panicle | Dawn | 0.79 | MC |
| SRR5110431 | panicle | Dawn | 1.38 | MC |
| SRR5110432 | panicle | Dawn | 2.16 | MC |
| SRR4947496 | root | control | 4.73 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 1.01 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 1.14 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.73 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 2.03 | MC |
| SRR5110437 | panicle | Dawn + 7h | 2.12 | MC |
| SRR5110438 | panicle | Dawn + 7h | 2.32 | MC |
| SRR5110439 | panicle | Dawn + 7h | 0.74 | MC |
| SRR5110440 | panicle | Dawn + 7h | 1.52 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 2.74 | MC |
| SRR5110442 | panicle | Dawn + 10.5h | 2.69 | MC |
| SRR5110443 | panicle | Dawn + 10.5h | 1.43 | MC |
| SRR5110444 | panicle | Dawn + 10.5h | 2.38 | MC |
| SRR5110445 | panicle | Dusk | 3.38 | MC |
| SRR5110446 | panicle | Dusk | 2.71 | MC |
| SRR5110447 | panicle | Dusk | 4.02 | MC |
| SRR5110448 | panicle | Dusk | 4.25 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.67 | MC |
| SRR5110450 | panicle | Dawn + 14h | 1.29 | MC |
| SRR5110451 | panicle | Dawn + 14h | 1.56 | MC |
| SRR5110452 | panicle | Dawn + 14h | 4.45 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 2.65 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 1.12 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 1.60 | MC |
| SRR5110456 | panicle | Dawn + 17.5h | 2.47 | MC |
| SRR5110457 | panicle | Dawn + 21h | 2.44 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.99 | MC |
| SRR5110459 | panicle | Dawn + 21h | 1.17 | MC |
| SRR5110460 | panicle | Dawn + 21h | 1.14 | MC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.22 | MC |
| SRR1633182 | panicle | WT | 1.52 | MC |
| SRR1633185 | panicle | WT | 2.59 | MC |
| SRR5126157 | root | "mock,7_days" | 4.83 | MC |
| SRR4947478 | root | control | 1.79 | MC |
| SRR4947479 | root | control | 1.50 | MC |
| SRR4947481 | root | control | 5.11 | MC |
| SRR4947482 | root | Al | 0.71 | MC |
| SRR4947483 | root | Al | 0.76 | MC |
| SRR4947484 | root | Al | 3.89 | MC |
| SRR4947485 | root | Al | 3.68 | MC |
| SRR4947487 | root | control | 2.45 | MC |
| SRR4947490 | root | Al | 1.16 | MC |
| SRR4947491 | root | Al | 2.84 | MC |
| SRR4947492 | root | Al | 2.10 | MC |
| SRR4947493 | root | Al | 1.59 | MC |
| SRR4947494 | root | control | 1.93 | MC |
| SRR4947497 | root | control | 3.55 | MC |
| SRR4947498 | root | Al | 0.58 | MC |
| SRR4947499 | root | Al | 0.53 | MC |
| SRR4947500 | root | Al | 1.93 | MC |
| SRR4947501 | root | Al | 1.11 | MC |
| SRR4947502 | root | control | 2.32 | MC |
| SRR4947503 | root | control | 1.30 | MC |
| SRR4947504 | root | control | 2.08 | MC |
| SRR4947505 | root | control | 1.54 | MC |
| SRR4947506 | root | Al | 0.59 | MC |
| SRR4947507 | root | Al | 1.37 | MC |
| SRR4947508 | root | Al | 1.39 | MC |
| SRR6502091 | root | 100 mM NaCl | 4.52 | MC |
| SRR6502092 | root | 100 mM NaCl | 2.66 | MC |
| SRR6502093 | root | 100 mM NaCl | 3.51 | MC |
| SRR6502095 | root | control | 4.18 | MC |
| SRR1740434 | root_differentiation_zone | wt | 2.68 | MC |
| SRR1740431 | root_elongation_zone | wt | 0.67 | MC |
| SRR1740432 | root_elongation_zone | wt | 2.11 | MC |
| SRR1740433 | root_elongation_zone | wt | 3.12 | MC |
| SRR1740428 | root_meristematic_zone | wt | 1.00 | MC |
| SRR1740429 | root_meristematic_zone | wt | 1.10 | MC |
| SRR1740430 | root_meristematic_zone | wt | 2.72 | MC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 1.40 | MC |
| SRR1944583 | seedling | no_treatment | 0.97 | MC |
| SRR358791 | seedling | wt | 3.09 | MC |
| SRR358792 | seedling | wt | 1.00 | MC |
| SRR358793 | seedling | wt | 3.63 | MC |
| SRR358794 | seedling | wt | 4.43 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.60 | MC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 7.42 | MC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.48 | MC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.03 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.10 | MC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 4.74 | MC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 3.56 | MC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 2.15 | MC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 2.30 | MC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 1.52 | MC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 3.40 | MC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.90 | MC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 1.68 | MC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 4.98 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.97 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.73 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.55 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 1.34 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.10 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 1.94 | MC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.88 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 2.15 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 2.17 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 1.43 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.83 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 1.06 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.85 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 1.76 | MC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.43 | MC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 1.14 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 1.88 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 3.43 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.61 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 3.22 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 2.34 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 2.86 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 3.54 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 3.00 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 1.66 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.14 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 2.54 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 1.35 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.58 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.54 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 3.59 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 1.55 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.31 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 1.29 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 1.53 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.62 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 1.50 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 1.91 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.21 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.53 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.52 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.62 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 2.00 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 2.17 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 1.95 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 3.48 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 2.22 | MC |