| SRR3745126 | anther | wt | 1.69 | MC |
| SRR358795 | callus | wt | 2.83 | MC |
| SRR358796 | callus | wt | 1.51 | MC |
| SRR358797 | callus | wt | 3.83 | MC |
| SRR6320473 | carpel | wt | 4.82 | MC |
| SRR6320498 | carpel | wt | 2.62 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 1.09 | MC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 2.65 | MC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.54 | MC |
| SRR4947495 | root | control | 1.90 | MC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 1.45 | MC |
| SRR7265400 | coleoptile | 2dA | 1.79 | MC |
| SRR7265401 | coleoptile | 2dA | 2.16 | MC |
| SRR7265402 | coleoptile | 2dA | 1.17 | MC |
| SRR7265403 | coleoptile | 2dN | 4.25 | MC |
| SRR7265404 | coleoptile | 2dN | 3.72 | MC |
| SRR7265406 | coleoptile | 3dA | 1.16 | MC |
| SRR7265407 | coleoptile | 3dA | 2.29 | MC |
| SRR7265408 | coleoptile | 3dA | 1.46 | MC |
| SRR7265412 | coleoptile | 4dA | 1.17 | MC |
| SRR7265413 | coleoptile | 4dA | 0.99 | MC |
| SRR7265414 | coleoptile | 4dA | 0.62 | MC |
| SRR7265418 | coleoptile | 3dN1dA | 2.59 | MC |
| SRR7265419 | coleoptile | 3dN1dA | 2.97 | MC |
| SRR7265420 | coleoptile | 3dN1dA | 3.28 | MC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.42 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 1.52 | MC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 2.42 | MC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 1.33 | MC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 2.41 | MC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.81 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 1.94 | MC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 1.33 | MC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 1.12 | MC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 1.74 | MC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 1.61 | MC |
| SRR7265373 | embryo | dry seed 0 h | 2.54 | MC |
| SRR7265374 | embryo | dry seed 0 h | 3.62 | MC |
| SRR7265375 | embryo | dry seed 0 h | 0.99 | MC |
| SRR7265376 | embryo | 1hA | 2.60 | MC |
| SRR7265377 | embryo | 1hA | 2.02 | MC |
| SRR7265378 | embryo | 1hA | 2.16 | MC |
| SRR7265380 | embryo | 1hN | 2.33 | MC |
| SRR7265381 | embryo | 1hN | 2.64 | MC |
| SRR7265382 | embryo | 3hA | 2.83 | MC |
| SRR7265383 | embryo | 3hA | 1.74 | MC |
| SRR7265384 | embryo | 3hA | 2.29 | MC |
| SRR7265385 | embryo | 3hN | 1.84 | MC |
| SRR7265386 | embryo | 3hN | 1.88 | MC |
| SRR7265387 | embryo | 3hN | 1.62 | MC |
| SRR7265390 | embryo | 12hA | 4.21 | MC |
| SRR7265394 | embryo | 24hA | 2.84 | MC |
| SRR7265395 | embryo | 24hA | 5.03 | MC |
| SRR7265396 | embryo | 24hA | 3.54 | MC |
| SRR7265397 | embryo | 24hN | 3.76 | MC |
| SRR7265398 | embryo | 24hN | 3.67 | MC |
| SRR7265399 | embryo | 24hN | 4.33 | MC |
| SRR4457233 | flag_leaf | DAH4 | 0.21 | MC |
| SRR1213690 | flower | wt(flower buds) | 3.76 | MC |
| SRR1213691 | flower | wt | 3.95 | MC |
| SRR8060835 | leaf | wild_type | 0.26 | MC |
| SRR8060836 | leaf | wild_type | 0.32 | MC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.47 | MC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.90 | MC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.44 | MC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.95 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.20 | MC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.58 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.36 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.37 | MC |
| SRR5856929 | leaf | control | 0.37 | MC |
| SRR5856930 | leaf | salt | 0.48 | MC |
| SRR5856931 | leaf | salt | 0.19 | MC |
| SRR5856932 | leaf | salt | 0.26 | MC |
| SRR5856933 | leaf | control | 0.61 | MC |
| SRR5856934 | leaf | control | 0.20 | MC |
| SRR5856938 | leaf | salt | 0.29 | MC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.60 | MC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.70 | MC |
| SRR8582893 | panicle | PM | 0.30 | MC |
| SRR4947496 | root | control | 0.62 | MC |
| SRR5110433 | panicle | Dawn + 3.5h | 4.90 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 3.35 | MC |
| SRR5110435 | panicle | Dawn + 3.5h | 1.99 | MC |
| SRR5110436 | panicle | Dawn + 3.5h | 3.34 | MC |
| SRR5110438 | panicle | Dawn + 7h | 3.87 | MC |
| SRR5110439 | panicle | Dawn + 7h | 4.26 | MC |
| SRR5110440 | panicle | Dawn + 7h | 2.65 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 1.67 | MC |
| SRR5110445 | panicle | Dusk | 4.30 | MC |
| SRR5110449 | panicle | Dawn + 14h | 4.92 | MC |
| SRR5110450 | panicle | Dawn + 14h | 4.13 | MC |
| SRR5110453 | panicle | Dawn + 17.5h | 3.05 | MC |
| SRR5110454 | panicle | Dawn + 17.5h | 2.03 | MC |
| SRR5110455 | panicle | Dawn + 17.5h | 3.87 | MC |
| SRR5110457 | panicle | Dawn + 21h | 1.84 | MC |
| SRR5110459 | panicle | Dawn + 21h | 3.46 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 1.16 | MC |
| SRR1633182 | panicle | WT | 3.03 | MC |
| SRR1633185 | panicle | WT | 5.13 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.65 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.80 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 1.12 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 1.55 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 3.58 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 2.59 | MC |
| SRR5126147 | root | "mock,1_day" | 0.35 | MC |
| SRR5126148 | root | "mock,1_day" | 0.31 | MC |
| SRR5126149 | root | "mock,1_day" | 0.56 | MC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.60 | MC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.34 | MC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.62 | MC |
| SRR5126153 | root | "mock,7_days" | 0.35 | MC |
| SRR5126155 | root | "mock,7_days" | 0.58 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.75 | MC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.93 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 1.03 | MC |
| SRR5126165 | root | "mock,14_days" | 0.53 | MC |
| SRR5126167 | root | "mock,14_days" | 0.33 | MC |
| SRR5126169 | root | "mock,14_days" | 0.51 | MC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 1.15 | MC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.90 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 1.35 | MC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.30 | MC |
| SRR1213694 | root | wt | 0.24 | MC |
| SRR4947478 | root | control | 1.42 | MC |
| SRR4947479 | root | control | 1.61 | MC |
| SRR4947480 | root | control | 0.84 | MC |
| SRR4947481 | root | control | 0.87 | MC |
| SRR4947482 | root | Al | 0.86 | MC |
| SRR4947484 | root | Al | 1.34 | MC |
| SRR4947485 | root | Al | 0.94 | MC |
| SRR4947487 | root | control | 0.57 | MC |
| SRR4947488 | root | control | 0.89 | MC |
| SRR4947489 | root | control | 1.15 | MC |
| SRR4947490 | root | Al | 1.39 | MC |
| SRR4947491 | root | Al | 3.45 | MC |
| SRR4947492 | root | Al | 3.16 | MC |
| SRR4947493 | root | Al | 1.26 | MC |
| SRR4947494 | root | control | 0.52 | MC |
| SRR4947497 | root | control | 2.78 | MC |
| SRR4947498 | root | Al | 1.97 | MC |
| SRR4947499 | root | Al | 2.01 | MC |
| SRR4947500 | root | Al | 3.01 | MC |
| SRR4947501 | root | Al | 2.93 | MC |
| SRR4947502 | root | control | 1.11 | MC |
| SRR4947503 | root | control | 2.16 | MC |
| SRR4947504 | root | control | 0.56 | MC |
| SRR4947505 | root | control | 1.30 | MC |
| SRR4947507 | root | Al | 3.12 | MC |
| SRR4947509 | root | Al | 0.98 | MC |
| SRR6502091 | root | 100 mM NaCl | 0.86 | MC |
| SRR6502107 | root | control | 0.31 | MC |
| SRR1740434 | root_differentiation_zone | wt | 0.52 | MC |
| SRR1740435 | root_differentiation_zone | wt | 0.50 | MC |
| SRR1740436 | root_differentiation_zone | wt | 0.39 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.34 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.55 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.47 | MC |
| SRR2154086 | seedling | wt | 0.42 | MC |
| SRR2154083 | seedling | wt | 1.35 | MC |
| SRR2154084 | seedling | wt | 0.75 | MC |
| SRR2154087 | seedling | wt | 0.38 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.41 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.68 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 14.51 | MC |
| SRR1617549 | shoot_apical_meristem | no collect | 1.67 | MC |
| SRR1617550 | shoot_apical_meristem | no collect | 1.91 | MC |
| SRR1617553 | shoot_apical_meristem | no collect | 2.69 | MC |
| SRR1617556 | shoot_apical_meristem | no collect | 2.14 | MC |
| SRR1617557 | shoot_apical_meristem | no collect | 1.53 | MC |
| SRR1617559 | shoot_apical_meristem | no collect | 1.20 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.65 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 1.72 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 1.15 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 1.87 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 2.38 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.18 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 2.06 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.43 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 2.15 | MC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 2.05 | MC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 2.65 | MC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 1.94 | MC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 1.78 | MC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 1.55 | MC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 1.59 | MC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 2.83 | MC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 3.11 | MC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 1.55 | MC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 1.26 | MC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 1.37 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 1.46 | MC |