| SRR358795 | callus | wt | 1.23 | MC |
| SRR358797 | callus | wt | 1.51 | MC |
| SRR358798 | callus | wt | 1.25 | MC |
| SRR5560728 | caryopsis | wild_type | 0.34 | MC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.43 | MC |
| SRR7265410 | coleoptile | 3dN | 0.33 | MC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.35 | MC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.52 | MC |
| SRR2338867 | endosprem | control | 0.53 | MC |
| SRR2338868 | endosprem | high_temperature | 0.58 | MC |
| SRR4457234 | flag_leaf | DAH12 | 0.47 | MC |
| SRR4457235 | flag_leaf | DAH12 | 0.83 | MC |
| SRR4457236 | flag_leaf | DAH12 | 0.71 | MC |
| SRR4457237 | flag_leaf | DAH20 | 0.70 | MC |
| SRR4457238 | flag_leaf | DAH20 | 0.62 | MC |
| SRR4457239 | flag_leaf | DAH20 | 0.72 | MC |
| SRR4457242 | flag_leaf | DAH28 | 0.38 | MC |
| SRR4457244 | flag_leaf | DAH36 | 0.44 | MC |
| SRR1213690 | flower | wt(flower buds) | 0.31 | MC |
| SRR1213691 | flower | wt | 1.48 | MC |
| SRR8240826 | leaf | wild_type | 0.28 | MC |
| SRR8240819 | leaf | wild_type | 0.30 | MC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 1.73 | MC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.92 | MC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.96 | MC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.53 | MC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.74 | MC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 1.12 | MC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.59 | MC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.44 | MC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.86 | MC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.79 | MC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 1.81 | MC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.91 | MC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 1.41 | MC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.91 | MC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 4.90 | MC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 1.82 | MC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.21 | MC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.89 | MC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 1.74 | MC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.50 | MC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.80 | MC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.44 | MC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.51 | MC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.47 | MC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 1.37 | MC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.94 | MC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.75 | MC |
| SRR6417967 | leaf | H2O_control | 1.00 | MC |
| SRR6417969 | leaf | H2O_control | 0.44 | MC |
| SRR3209769 | leaf | Watered;Long_Day | 0.21 | MC |
| SRR3209770 | leaf | Watered;Long_Day | 0.31 | MC |
| SRR3209773 | leaf | Watered;Short_Day | 0.59 | MC |
| SRR3209774 | leaf | Watered;Short_Day | 0.25 | MC |
| SRR3209777 | leaf | Watered;Long_Day | 0.30 | MC |
| SRR3209779 | leaf | Watered;Short_Day | 0.37 | MC |
| SRR8611902 | leaf | Non-inoculated | 0.22 | MC |
| SRR6216698 | leaf | nontransgenic rice plant | 0.43 | MC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.45 | MC |
| SRR1213693 | leaf | wt | 0.48 | MC |
| SRR6502085 | leaf | 100 mM NaCl | 0.50 | MC |
| SRR6502087 | leaf | 100 mM NaCl | 0.41 | MC |
| SRR6502088 | leaf | control | 0.42 | MC |
| SRR6502097 | leaf | 100 mM NaCl | 0.64 | MC |
| SRR6502099 | leaf | 100 mM NaCl | 0.50 | MC |
| SRR6502100 | leaf | control | 0.55 | MC |
| SRR6502101 | leaf | control | 0.52 | MC |
| SRR6502102 | leaf | control | 0.34 | MC |
| SRR6168973 | leaf | none (control) | 0.32 | MC |
| SRR6168974 | leaf | none (control) | 0.30 | MC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.21 | MC |
| SRR5110430 | panicle | Dawn | 1.03 | MC |
| SRR5110431 | panicle | Dawn | 1.16 | MC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.56 | MC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.72 | MC |
| SRR5110445 | panicle | Dusk | 0.63 | MC |
| SRR5110449 | panicle | Dawn + 14h | 1.60 | MC |
| SRR5110450 | panicle | Dawn + 14h | 0.96 | MC |
| SRR5110451 | panicle | Dawn + 14h | 0.67 | MC |
| SRR5110452 | panicle | Dawn + 14h | 0.72 | MC |
| SRR5110458 | panicle | Dawn + 21h | 0.66 | MC |
| SRR1213696 | endosprem | wt(milk grains) | 0.26 | MC |
| SRR1633182 | panicle | WT | 1.86 | MC |
| SRR1633185 | panicle | WT | 3.54 | MC |
| SRR5278374 | pistil | "Balilla,S1" | 0.28 | MC |
| SRR5278375 | pistil | "Balilla,S1" | 0.39 | MC |
| SRR5278376 | pistil | "Balilla,S2" | 0.35 | MC |
| SRR5278377 | pistil | "Balilla,S2" | 0.47 | MC |
| SRR5278378 | pistil | "Balilla,S3" | 0.96 | MC |
| SRR5278379 | pistil | "Balilla,S3" | 1.26 | MC |
| SRR5126147 | root | "mock,1_day" | 0.32 | MC |
| SRR5126148 | root | "mock,1_day" | 0.30 | MC |
| SRR5126155 | root | "mock,7_days" | 0.30 | MC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.39 | MC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.42 | MC |
| SRR5126169 | root | "mock,14_days" | 0.39 | MC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.40 | MC |
| SRR1213695 | root | wt | 0.97 | MC |
| SRR6502093 | root | 100 mM NaCl | 0.49 | MC |
| SRR6502104 | root | 100 mM NaCl | 0.69 | MC |
| SRR6502105 | root | 100 mM NaCl | 0.28 | MC |
| SRR1740432 | root_elongation_zone | wt | 0.43 | MC |
| SRR1740433 | root_elongation_zone | wt | 0.29 | MC |
| SRR1740429 | root_meristematic_zone | wt | 0.28 | MC |
| SRR1740430 | root_meristematic_zone | wt | 0.26 | MC |
| SRR6441554 | seedling | wild_type | 0.22 | MC |
| SRR6441555 | seedling | wild_type | 0.34 | MC |
| SRR2154086 | seedling | wt | 0.47 | MC |
| SRR2154087 | seedling | wt | 0.35 | MC |
| SRR3098742 | seedling | wt | 0.24 | MC |
| SRR3098743 | seedling | wt | 0.18 | MC |
| SRR2857719 | seedling | drought_stress_0h | 0.37 | MC |
| SRR2857720 | seedling | drought_stress_1h | 0.98 | MC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 2.69 | MC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.97 | MC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.82 | MC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.90 | MC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.66 | MC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.85 | MC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.33 | MC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.44 | MC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.63 | MC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.43 | MC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.52 | MC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.63 | MC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.78 | MC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.35 | MC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.45 | MC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.57 | MC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.37 | MC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.75 | MC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 2.29 | MC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 4.41 | MC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 2.78 | MC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 2.85 | MC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 3.03 | MC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 3.74 | MC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 2.83 | MC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 2.61 | MC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 2.50 | MC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 2.25 | MC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 3.64 | MC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 3.04 | MC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 2.64 | MC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 3.11 | MC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 2.94 | MC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 3.16 | MC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 2.83 | MC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 2.85 | MC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 3.19 | MC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 2.47 | MC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 2.98 | MC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 2.22 | MC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 2.86 | MC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 1.25 | MC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.94 | MC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.64 | MC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 2.04 | MC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 1.22 | MC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 2.06 | MC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 1.72 | MC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.73 | MC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 1.19 | MC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.17 | MC |