| SRR1740429 | root_meristematic_zone | wt | 0.13 | LC |
| SRR1740428 | root_meristematic_zone | wt | 0.17 | LC |
| SRR6168981 | leaf | none (control) | 0.07 | LC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.13 | LC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.03 | LC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.16 | LC |
| SRR5856928 | leaf | control | 0.10 | LC |
| SRR5856929 | leaf | control | 0.08 | LC |
| SRR5856927 | leaf | control | 0.05 | LC |
| SRR1740435 | root_differentiation_zone | wt | 0.09 | LC |
| SRR3745125 | anther | wt | 0.20 | LC |
| SRR3745126 | anther | wt | 0.42 | LC |
| SRR5560727 | caryopsis | wild_type | 0.20 | LC |
| SRR6417968 | leaf | H2O_control | 0.27 | LC |
| SRR6417969 | leaf | H2O_control | 0.09 | LC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.39 | LC |
| SRR6417967 | leaf | H2O_control | 0.27 | LC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.16 | LC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.30 | LC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.43 | LC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.44 | LC |
| SRR4947508 | root | Al | 0.43 | LC |
| SRR4947500 | root | Al | 0.51 | LC |
| SRR4947502 | root | control | 0.46 | LC |
| SRR4947504 | root | control | 0.29 | LC |
| SRR4947505 | root | control | 0.44 | LC |
| SRR4947506 | root | Al | 0.28 | LC |
| SRR8582888 | panicle | AM | 0.09 | LC |
| SRR8582889 | panicle | AM | 0.05 | LC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.14 | LC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.28 | LC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.12 | LC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.05 | LC |
| SRR6168980 | leaf | none (control) | 0.00 | LC |
| SRR7265409 | coleoptile | 3dN | 0.09 | LC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.11 | LC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.00 | LC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.37 | LC |
| SRR4947478 | root | control | 0.42 | LC |
| SRR4947479 | root | control | 0.15 | LC |
| SRR358798 | callus | wt | 0.00 | LC |
| SRR358796 | callus | wt | 0.09 | LC |
| SRR358797 | callus | wt | 0.16 | LC |
| SRR358795 | callus | wt | 0.29 | LC |
| SRR2338869 | endosprem | high_temperature | 0.04 | LC |
| SRR2338868 | endosprem | high_temperature | 0.26 | LC |
| SRR6502107 | root | control | 0.24 | LC |
| SRR2338867 | endosprem | control | 0.18 | LC |
| SRR2338866 | endosprem | control | 0.90 | LC |
| SRR5856931 | leaf | salt | 0.04 | LC |
| SRR5856930 | leaf | salt | 0.00 | LC |
| SRR5856933 | leaf | control | 0.10 | LC |
| SRR5856932 | leaf | salt | 0.00 | LC |
| SRR5856937 | leaf | salt | 0.07 | LC |
| SRR5856936 | leaf | salt | 0.07 | LC |
| SRR4947498 | root | Al | 0.45 | LC |
| SRR4947499 | root | Al | 0.21 | LC |
| SRR4947492 | root | Al | 0.48 | LC |
| SRR4947493 | root | Al | 0.35 | LC |
| SRR4947490 | root | Al | 0.34 | LC |
| SRR4947491 | root | Al | 0.39 | LC |
| SRR4947497 | root | control | 0.33 | LC |
| SRR4947494 | root | control | 0.14 | LC |
| SRR4947495 | root | control | 0.39 | LC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.13 | LC |
| SRR8240819 | leaf | wild_type | 0.15 | LC |
| SRR7265388 | embryo | 12hA | 0.36 | LC |
| SRR7265384 | embryo | 3hA | 0.03 | LC |
| SRR7265385 | embryo | 3hN | 0.03 | LC |
| SRR7265386 | embryo | 3hN | 0.06 | LC |
| SRR7265387 | embryo | 3hN | 0.04 | LC |
| SRR7265380 | embryo | 1hN | 0.05 | LC |
| SRR7265381 | embryo | 1hN | 0.07 | LC |
| SRR7265382 | embryo | 3hA | 0.10 | LC |
| SRR7265383 | embryo | 3hA | 0.12 | LC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.02 | LC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 0.18 | LC |
| SRR6168975 | leaf | none (control) | 0.14 | LC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.37 | LC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.33 | LC |
| SRR8582891 | panicle | PM | 0.19 | LC |
| SRR8582890 | panicle | AM | 0.12 | LC |
| SRR8582893 | panicle | PM | 0.14 | LC |
| SRR8582892 | panicle | PM | 0.17 | LC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.73 | LC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.19 | LC |
| SRR6320473 | carpel | wt | 0.20 | LC |
| SRR7265379 | embryo | 1hN | 0.13 | LC |
| SRR7265378 | embryo | 1hA | 0.05 | LC |
| SRR7265375 | embryo | dry seed 0 h | 0.02 | LC |
| SRR7265374 | embryo | dry seed 0 h | 0.09 | LC |
| SRR7265377 | embryo | 1hA | 0.07 | LC |
| SRR7265376 | embryo | 1hA | 0.05 | LC |
| SRR7265373 | embryo | dry seed 0 h | 0.05 | LC |
| SRR4457243 | flag_leaf | DAH36 | 0.29 | LC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.55 | LC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.05 | LC |
| SRR4947489 | root | control | 0.32 | LC |
| SRR4947488 | root | control | 0.32 | LC |
| SRR4947481 | root | control | 0.46 | LC |
| SRR4947480 | root | control | 0.31 | LC |
| SRR4947483 | root | Al | 0.39 | LC |
| SRR4947482 | root | Al | 0.17 | LC |
| SRR4947485 | root | Al | 0.24 | LC |
| SRR4947487 | root | control | 0.33 | LC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.04 | LC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.21 | LC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.05 | LC |
| SRR6502096 | root | control | 0.15 | LC |
| SRR6502095 | root | control | 0.36 | LC |
| SRR6502094 | root | control | 0.24 | LC |
| SRR7265396 | embryo | 24hA | 0.36 | LC |
| SRR7265394 | embryo | 24hA | 0.24 | LC |
| SRR7265399 | embryo | 24hN | 0.38 | LC |
| SRR8240824 | leaf | wild_type | 0.12 | LC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 0.62 | LC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 0.67 | LC |
| SRR6053395 | leaf | gibberellic acid (GA) | 0.00 | LC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 0.96 | LC |
| SRR6053397 | leaf | gibberellic acid (GA) | 0.00 | LC |
| SRR6053396 | leaf | gibberellic acid (GA) | 0.14 | LC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 0.42 | LC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 0.00 | LC |
| SRR1761528 | leaf | drought | 0.25 | LC |
| SRR3745127 | anther | wt | 0.08 | LC |
| SRR6168973 | leaf | none (control) | 0.24 | LC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.14 | LC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.13 | LC |
| SRR1740436 | root_differentiation_zone | wt | 0.12 | LC |
| SRR6168979 | leaf | none (control) | 0.03 | LC |
| SRR1740434 | root_differentiation_zone | wt | 0.03 | LC |
| SRR1740430 | root_meristematic_zone | wt | 0.14 | LC |
| SRR1740431 | root_elongation_zone | wt | 0.26 | LC |
| SRR8240826 | leaf | wild_type | 0.00 | LC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.15 | LC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.25 | LC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.25 | LC |
| SRR6320498 | carpel | wt | 0.28 | LC |
| SRR5126149 | root | "mock,1_day" | 0.27 | LC |
| SRR5856938 | leaf | salt | 0.07 | LC |
| SRR5126147 | root | "mock,1_day" | 0.23 | LC |
| SRR2857721 | seedling | drought_stress_6h | 0.16 | LC |
| SRR7265415 | coleoptile | 4dN | 0.10 | LC |
| SRR7265416 | coleoptile | 4dN | 0.11 | LC |
| SRR7265417 | coleoptile | 4dN | 0.20 | LC |
| SRR7265410 | coleoptile | 3dN | 0.05 | LC |
| SRR7265411 | coleoptile | 3dN | 0.10 | LC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.23 | LC |
| SRR7265418 | coleoptile | 3dN1dA | 0.22 | LC |
| SRR7265419 | coleoptile | 3dN1dA | 0.35 | LC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.09 | LC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.16 | LC |
| SRR5856935 | leaf | control | 0.17 | LC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.26 | LC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.28 | LC |
| SRR5856934 | leaf | control | 0.00 | LC |