| SRR1740429 | root_meristematic_zone | wt | 0.13 | LC |
| SRR1740428 | root_meristematic_zone | wt | 0.09 | LC |
| SRR3209769 | leaf | Watered;Long_Day | 0.00 | LC |
| SRR5856928 | leaf | control | 0.14 | LC |
| SRR5856929 | leaf | control | 0.15 | LC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.17 | LC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.05 | LC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.07 | LC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.06 | LC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.33 | LC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.17 | LC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.42 | LC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.17 | LC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.33 | LC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.24 | LC |
| SRR1740435 | root_differentiation_zone | wt | 0.09 | LC |
| SRR3209780 | leaf | Drought;Short_Day | 0.11 | LC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.11 | LC |
| SRR3745125 | anther | wt | 0.16 | LC |
| SRR3745126 | anther | wt | 0.17 | LC |
| SRR6417968 | leaf | H2O_control | 0.13 | LC |
| SRR6417967 | leaf | H2O_control | 0.24 | LC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.11 | LC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.03 | LC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.00 | LC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.05 | LC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.04 | LC |
| SRR2857720 | seedling | drought_stress_1h | 0.30 | LC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.41 | LC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.15 | LC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 0.01 | LC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 0.00 | LC |
| SRR4947508 | root | Al | 0.00 | LC |
| SRR4947509 | root | Al | 0.08 | LC |
| SRR4947502 | root | control | 0.26 | LC |
| SRR4947505 | root | control | 0.41 | LC |
| SRR4947506 | root | Al | 0.15 | LC |
| SRR4947507 | root | Al | 0.47 | LC |
| SRR8582888 | panicle | AM | 0.02 | LC |
| SRR8582889 | panicle | AM | 0.09 | LC |
| SRR5126153 | root | "mock,7_days" | 0.28 | LC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.34 | LC |
| SRR6168980 | leaf | none (control) | 0.11 | LC |
| SRR6502088 | leaf | control | 0.15 | LC |
| SRR6502089 | leaf | control | 0.05 | LC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.27 | LC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.41 | LC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.10 | LC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.10 | LC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.15 | LC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.24 | LC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.18 | LC |
| SRR5110446 | panicle | Dusk | 0.23 | LC |
| SRR5110440 | panicle | Dawn + 7h | 0.17 | LC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.49 | LC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.26 | LC |
| SRR5110448 | panicle | Dusk | 0.38 | LC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.29 | LC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.19 | LC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.06 | LC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.22 | LC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.21 | LC |
| SRR4947478 | root | control | 0.00 | LC |
| SRR4947479 | root | control | 0.00 | LC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.17 | LC |
| SRR358798 | callus | wt | 0.54 | LC |
| SRR358796 | callus | wt | 0.34 | LC |
| SRR358797 | callus | wt | 0.47 | LC |
| SRR358794 | seedling | wt | 0.45 | LC |
| SRR358795 | callus | wt | 0.51 | LC |
| SRR358792 | seedling | wt | 0.38 | LC |
| SRR358793 | seedling | wt | 0.00 | LC |
| SRR358791 | seedling | wt | 0.14 | LC |
| SRR2338869 | endosprem | high_temperature | 0.36 | LC |
| SRR2338868 | endosprem | high_temperature | 0.22 | LC |
| SRR6502108 | root | control | 0.28 | LC |
| SRR6502105 | root | 100 mM NaCl | 0.00 | LC |
| SRR6502104 | root | 100 mM NaCl | 0.04 | LC |
| SRR6502106 | root | control | 0.00 | LC |
| SRR6502101 | leaf | control | 0.00 | LC |
| SRR6502100 | leaf | control | 0.15 | LC |
| SRR2338867 | endosprem | control | 0.23 | LC |
| SRR2338866 | endosprem | control | 0.57 | LC |
| SRR3209777 | leaf | Watered;Long_Day | 0.00 | LC |
| SRR3209775 | leaf | Drought;Short_Day | 0.24 | LC |
| SRR3209774 | leaf | Watered;Short_Day | 0.08 | LC |
| SRR3209772 | leaf | Drought;Long_Day | 0.14 | LC |
| SRR3209771 | leaf | Drought;Long_Day | 0.00 | LC |
| SRR3209770 | leaf | Watered;Long_Day | 0.12 | LC |
| SRR3209778 | leaf | Drought;Long_Day | 0.04 | LC |
| SRR5856930 | leaf | salt | 0.15 | LC |
| SRR4947499 | root | Al | 0.28 | LC |
| SRR4947493 | root | Al | 0.11 | LC |
| SRR4947494 | root | control | 0.09 | LC |
| SRR4947495 | root | control | 0.31 | LC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.27 | LC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.16 | LC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.07 | LC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.31 | LC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.22 | LC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.27 | LC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.27 | LC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.20 | LC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.22 | LC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.25 | LC |
| SRR6502085 | leaf | 100 mM NaCl | 0.00 | LC |
| SRR6502086 | leaf | 100 mM NaCl | 0.00 | LC |
| SRR6502087 | leaf | 100 mM NaCl | 0.00 | LC |
| SRR8240818 | leaf | wild_type | 0.00 | LC |
| SRR8240819 | leaf | wild_type | 0.05 | LC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.22 | LC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.37 | LC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.26 | LC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.26 | LC |
| SRR1761530 | leaf | control | 0.00 | LC |
| SRR1761531 | leaf | control | 0.27 | LC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.00 | LC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.07 | LC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.10 | LC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.00 | LC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.00 | LC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.25 | LC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.09 | LC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.10 | LC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 1.61 | LC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 0.60 | LC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.16 | LC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 0.00 | LC |
| SRR8582890 | panicle | AM | 0.14 | LC |
| SRR2154084 | seedling | wt | 0.00 | LC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.12 | LC |
| SRR1617559 | shoot_apical_meristem | no collect | 0.00 | LC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.00 | LC |
| SRR1617550 | shoot_apical_meristem | no collect | 0.36 | LC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.14 | LC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.00 | LC |
| SRR1617554 | shoot_apical_meristem | no collect | 0.28 | LC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.38 | LC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.17 | LC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.00 | LC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.29 | LC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.26 | LC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.29 | LC |
| SRR5110450 | panicle | Dawn + 14h | 0.25 | LC |
| SRR4457245 | flag_leaf | DAH36 | 0.16 | LC |
| SRR4457244 | flag_leaf | DAH36 | 0.12 | LC |
| SRR4457247 | flag_leaf | DAH44 | 0.18 | LC |
| SRR4457246 | flag_leaf | DAH44 | 0.13 | LC |
| SRR4457241 | flag_leaf | DAH28 | 0.08 | LC |
| SRR4457240 | flag_leaf | DAH28 | 0.00 | LC |
| SRR4457243 | flag_leaf | DAH36 | 0.32 | LC |
| SRR4457242 | flag_leaf | DAH28 | 0.09 | LC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 3.15 | LC |
| SRR4457249 | 2nd_leaf | DAH4 | 0.45 | LC |
| SRR4457248 | flag_leaf | DAH44 | 0.00 | LC |
| SRR6441554 | seedling | wild_type | 0.10 | LC |
| SRR6441555 | seedling | wild_type | 0.15 | LC |
| SRR8611902 | leaf | Non-inoculated | 0.17 | LC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.00 | LC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.16 | LC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.00 | LC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.27 | LC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.22 | LC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.55 | LC |
| SRR4947489 | root | control | 0.06 | LC |
| SRR4947480 | root | control | 0.17 | LC |
| SRR4947483 | root | Al | 0.06 | LC |
| SRR4947484 | root | Al | 0.42 | LC |
| SRR4947487 | root | control | 0.07 | LC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 0.05 | LC |
| SRR6502092 | root | 100 mM NaCl | 0.04 | LC |
| SRR6502090 | leaf | control | 0.20 | LC |
| SRR6502096 | root | control | 0.00 | LC |
| SRR6502095 | root | control | 0.00 | LC |
| SRR6502094 | root | control | 0.07 | LC |
| SRR6502099 | leaf | 100 mM NaCl | 0.00 | LC |
| SRR6502098 | leaf | 100 mM NaCl | 0.19 | LC |
| SRR8240825 | leaf | wild_type | 0.00 | LC |
| SRR8240824 | leaf | wild_type | 0.09 | LC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 0.60 | LC |
| SRR6053395 | leaf | gibberellic acid (GA) | 0.00 | LC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 0.14 | LC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 0.54 | LC |
| SRR8240820 | leaf | wild_type | 0.11 | LC |
| SRR4457238 | flag_leaf | DAH20 | 0.24 | LC |
| SRR4457239 | flag_leaf | DAH20 | 0.32 | LC |
| SRR4457235 | flag_leaf | DAH12 | 0.18 | LC |
| SRR4457236 | flag_leaf | DAH12 | 0.12 | LC |
| SRR4457237 | flag_leaf | DAH20 | 0.13 | LC |
| SRR1761528 | leaf | drought | 0.02 | LC |
| SRR3745127 | anther | wt | 0.00 | LC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.12 | LC |
| SRR6168974 | leaf | none (control) | 0.23 | LC |
| SRR6168979 | leaf | none (control) | 0.00 | LC |
| SRR1740434 | root_differentiation_zone | wt | 0.17 | LC |
| SRR1944583 | seedling | no_treatment | 0.00 | LC |
| SRR1740432 | root_elongation_zone | wt | 0.00 | LC |
| SRR1740431 | root_elongation_zone | wt | 0.17 | LC |
| SRR8240826 | leaf | wild_type | 0.02 | LC |
| SRR8060835 | leaf | wild_type | 0.16 | LC |
| SRR8060836 | leaf | wild_type | 0.09 | LC |
| SRR8060837 | leaf | wild_type | 0.08 | LC |
| SRR6502103 | root | 100 mM NaCl | 0.05 | LC |
| SRR6502102 | leaf | control | 0.10 | LC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 2.21 | LC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 2.43 | LC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 0.29 | LC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 1.01 | LC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 0.87 | LC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 1.21 | LC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.02 | LC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.02 | LC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.27 | LC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.00 | LC |
| SRR2857719 | seedling | drought_stress_0h | 0.20 | LC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.11 | LC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.08 | LC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.50 | LC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.00 | LC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.21 | LC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.53 | LC |