| SRR1740428 | root_meristematic_zone | wt | 0.38 | LC |
| SRR3209769 | leaf | Watered;Long_Day | 0.00 | LC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.27 | LC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.53 | LC |
| SRR5110431 | panicle | Dawn | 0.28 | LC |
| SRR5110430 | panicle | Dawn | 0.15 | LC |
| SRR1740435 | root_differentiation_zone | wt | 0.08 | LC |
| SRR3745125 | anther | wt | 0.00 | LC |
| SRR3745126 | anther | wt | 0.00 | LC |
| SRR6417968 | leaf | H2O_control | 0.00 | LC |
| SRR6417969 | leaf | H2O_control | 0.06 | LC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.00 | LC |
| SRR6417967 | leaf | H2O_control | 0.00 | LC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.00 | LC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.00 | LC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.00 | LC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.25 | LC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.10 | LC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.00 | LC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.07 | LC |
| SRR4947508 | root | Al | 0.34 | LC |
| SRR4947500 | root | Al | 0.16 | LC |
| SRR4947503 | root | control | 0.34 | LC |
| SRR4947505 | root | control | 0.37 | LC |
| SRR4947507 | root | Al | 0.35 | LC |
| SRR8582888 | panicle | AM | 0.22 | LC |
| SRR8582889 | panicle | AM | 0.09 | LC |
| SRR6168980 | leaf | none (control) | 0.11 | LC |
| SRR6502089 | leaf | control | 0.18 | LC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.00 | LC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.11 | LC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.40 | LC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.03 | LC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.16 | LC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.12 | LC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 0.09 | LC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.19 | LC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 0.17 | LC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.12 | LC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.27 | LC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.16 | LC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.07 | LC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.02 | LC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.08 | LC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.07 | LC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.18 | LC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.36 | LC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.22 | LC |
| SRR4947478 | root | control | 0.37 | LC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.13 | LC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.07 | LC |
| SRR358798 | callus | wt | 0.31 | LC |
| SRR358796 | callus | wt | 0.99 | LC |
| SRR358794 | seedling | wt | 0.26 | LC |
| SRR358795 | callus | wt | 0.83 | LC |
| SRR358791 | seedling | wt | 0.32 | LC |
| SRR2338868 | endosprem | high_temperature | 0.00 | LC |
| SRR6502104 | root | 100 mM NaCl | 0.19 | LC |
| SRR2338866 | endosprem | control | 0.49 | LC |
| SRR3209777 | leaf | Watered;Long_Day | 0.19 | LC |
| SRR3209776 | leaf | Drought;Short_Day | 0.12 | LC |
| SRR3209775 | leaf | Drought;Short_Day | 0.05 | LC |
| SRR3209774 | leaf | Watered;Short_Day | 0.00 | LC |
| SRR3209773 | leaf | Watered;Short_Day | 0.09 | LC |
| SRR3209772 | leaf | Drought;Long_Day | 0.22 | LC |
| SRR3209771 | leaf | Drought;Long_Day | 0.13 | LC |
| SRR3209770 | leaf | Watered;Long_Day | 0.00 | LC |
| SRR3209779 | leaf | Watered;Short_Day | 0.00 | LC |
| SRR3209778 | leaf | Drought;Long_Day | 0.14 | LC |
| SRR5278375 | pistil | "Balilla,S1" | 0.08 | LC |
| SRR5278374 | pistil | "Balilla,S1" | 0.13 | LC |
| SRR5278376 | pistil | "Balilla,S2" | 0.31 | LC |
| SRR5856932 | leaf | salt | 0.15 | LC |
| SRR5856937 | leaf | salt | 0.07 | LC |
| SRR4947498 | root | Al | 0.42 | LC |
| SRR4947492 | root | Al | 0.57 | LC |
| SRR4947491 | root | Al | 0.45 | LC |
| SRR4947496 | root | control | 0.33 | LC |
| SRR4947497 | root | control | 0.32 | LC |
| SRR4947494 | root | control | 0.39 | LC |
| SRR4947495 | root | control | 0.39 | LC |
| SRR5126165 | root | "mock,14_days" | 0.03 | LC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.00 | LC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.11 | LC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.05 | LC |
| SRR8240818 | leaf | wild_type | 0.05 | LC |
| SRR8240819 | leaf | wild_type | 0.18 | LC |
| SRR7265385 | embryo | 3hN | 0.20 | LC |
| SRR7265382 | embryo | 3hA | 0.25 | LC |
| SRR7265383 | embryo | 3hA | 0.17 | LC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 0.00 | LC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.00 | LC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.00 | LC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.05 | LC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.24 | LC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.00 | LC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.00 | LC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.00 | LC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.00 | LC |
| SRR1761530 | leaf | control | 0.13 | LC |
| SRR1761531 | leaf | control | 0.07 | LC |
| SRR8582891 | panicle | PM | 0.35 | LC |
| SRR8582892 | panicle | PM | 0.22 | LC |
| SRR2154083 | seedling | wt | 0.02 | LC |
| SRR2154082 | seedling | wt | 0.00 | LC |
| SRR2154084 | seedling | wt | 0.06 | LC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.01 | LC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.06 | LC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.17 | LC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.16 | LC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 0.06 | LC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.10 | LC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.16 | LC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.01 | LC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.12 | LC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.07 | LC |
| SRR6320473 | carpel | wt | 0.00 | LC |
| SRR5110458 | panicle | Dawn + 21h | 0.37 | LC |
| SRR5110450 | panicle | Dawn + 14h | 0.35 | LC |
| SRR7265375 | embryo | dry seed 0 h | 0.15 | LC |
| SRR7265374 | embryo | dry seed 0 h | 0.27 | LC |
| SRR7265377 | embryo | 1hA | 0.23 | LC |
| SRR7265373 | embryo | dry seed 0 h | 0.22 | LC |
| SRR4457245 | flag_leaf | DAH36 | 0.05 | LC |
| SRR4457244 | flag_leaf | DAH36 | 0.00 | LC |
| SRR4457247 | flag_leaf | DAH44 | 0.12 | LC |
| SRR4457246 | flag_leaf | DAH44 | 0.23 | LC |
| SRR4457241 | flag_leaf | DAH28 | 0.04 | LC |
| SRR4457240 | flag_leaf | DAH28 | 0.00 | LC |
| SRR4457243 | flag_leaf | DAH36 | 0.04 | LC |
| SRR4457242 | flag_leaf | DAH28 | 0.01 | LC |
| SRR4457249 | 2nd_leaf | DAH4 | 0.09 | LC |
| SRR4457248 | flag_leaf | DAH44 | 0.30 | LC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.03 | LC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.17 | LC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.01 | LC |
| SRR1213694 | root | wt | 0.21 | LC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.10 | LC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.00 | LC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.13 | LC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.07 | LC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.00 | LC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.02 | LC |
| SRR4947482 | root | Al | 0.16 | LC |
| SRR4947484 | root | Al | 0.36 | LC |
| SRR4947487 | root | control | 0.17 | LC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 1.16 | LC |
| SRR6502093 | root | 100 mM NaCl | 0.42 | LC |
| SRR6502095 | root | control | 0.33 | LC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 0.00 | LC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 0.00 | LC |
| SRR6053395 | leaf | gibberellic acid (GA) | 0.45 | LC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 0.00 | LC |
| SRR6053397 | leaf | gibberellic acid (GA) | 0.00 | LC |
| SRR6053396 | leaf | gibberellic acid (GA) | 0.00 | LC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 0.80 | LC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 0.00 | LC |
| SRR4457238 | flag_leaf | DAH20 | 0.07 | LC |
| SRR4457239 | flag_leaf | DAH20 | 0.20 | LC |
| SRR4457234 | flag_leaf | DAH12 | 0.07 | LC |
| SRR4457235 | flag_leaf | DAH12 | 0.00 | LC |
| SRR4457236 | flag_leaf | DAH12 | 0.02 | LC |
| SRR4457237 | flag_leaf | DAH20 | 0.13 | LC |
| SRR4457231 | flag_leaf | DAH4 | 0.14 | LC |
| SRR4457232 | flag_leaf | DAH4 | 0.11 | LC |
| SRR4457233 | flag_leaf | DAH4 | 0.10 | LC |
| SRR1761529 | leaf | drought | 0.07 | LC |
| SRR1761528 | leaf | drought | 0.08 | LC |
| SRR3745127 | anther | wt | 0.04 | LC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.05 | LC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.05 | LC |
| SRR1740436 | root_differentiation_zone | wt | 0.03 | LC |
| SRR1740432 | root_elongation_zone | wt | 0.11 | LC |
| SRR1740433 | root_elongation_zone | wt | 0.16 | LC |
| SRR8240826 | leaf | wild_type | 0.04 | LC |
| SRR1633185 | panicle | WT | 0.22 | LC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.56 | LC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 0.00 | LC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 0.00 | LC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 0.00 | LC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.07 | LC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.08 | LC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.07 | LC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.08 | LC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.07 | LC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.13 | LC |
| SRR6320498 | carpel | wt | 0.71 | LC |
| SRR976168 | flag_leaf | wild_type | 0.18 | LC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.00 | LC |
| SRR5126147 | root | "mock,1_day" | 0.13 | LC |
| SRR2857721 | seedling | drought_stress_6h | 0.05 | LC |
| SRR7265412 | coleoptile | 4dA | 0.28 | LC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.24 | LC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.11 | LC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.00 | LC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.00 | LC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.09 | LC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.07 | LC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.21 | LC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.13 | LC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.32 | LC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.36 | LC |