| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.10 | LC |
| SRR6168981 | leaf | none (control) | 0.17 | LC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.17 | LC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.10 | LC |
| SRR5856928 | leaf | control | 0.16 | LC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.02 | LC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.01 | LC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.20 | LC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.17 | LC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.32 | LC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.26 | LC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.32 | LC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.20 | LC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.07 | LC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.03 | LC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.13 | LC |
| SRR5560728 | caryopsis | wild_type | 0.18 | LC |
| SRR5560727 | caryopsis | wild_type | 0.13 | LC |
| SRR6417968 | leaf | H2O_control | 0.26 | LC |
| SRR6417969 | leaf | H2O_control | 0.29 | LC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.11 | LC |
| SRR6417967 | leaf | H2O_control | 0.19 | LC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.20 | LC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.27 | LC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.24 | LC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.38 | LC |
| SRR2857720 | seedling | drought_stress_1h | 0.19 | LC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.26 | LC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.29 | LC |
| SRR4947508 | root | Al | 0.27 | LC |
| SRR4947509 | root | Al | 0.14 | LC |
| SRR4947500 | root | Al | 0.22 | LC |
| SRR4947501 | root | Al | 0.17 | LC |
| SRR4947504 | root | control | 0.16 | LC |
| SRR4947505 | root | control | 0.24 | LC |
| SRR3098742 | seedling | wt | 0.04 | LC |
| SRR3098743 | seedling | wt | 0.09 | LC |
| SRR3098741 | seedling | wt | 0.06 | LC |
| SRR8582888 | panicle | AM | 0.18 | LC |
| SRR5126153 | root | "mock,7_days" | 0.16 | LC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.11 | LC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 0.19 | LC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.25 | LC |
| SRR5126157 | root | "mock,7_days" | 0.08 | LC |
| SRR5126155 | root | "mock,7_days" | 0.14 | LC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 0.21 | LC |
| SRR6168980 | leaf | none (control) | 0.07 | LC |
| SRR7265409 | coleoptile | 3dN | 0.32 | LC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.37 | LC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.38 | LC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.15 | LC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.19 | LC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.22 | LC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.15 | LC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.21 | LC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.13 | LC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.13 | LC |
| SRR4457258 | 2nd_leaf | DAH28 | 0.19 | LC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.23 | LC |
| SRR2338869 | endosprem | high_temperature | 0.00 | LC |
| SRR2338868 | endosprem | high_temperature | 0.03 | LC |
| SRR6502108 | root | control | 0.31 | LC |
| SRR6502100 | leaf | control | 0.31 | LC |
| SRR2338867 | endosprem | control | 0.00 | LC |
| SRR2338866 | endosprem | control | 0.08 | LC |
| SRR5278375 | pistil | "Balilla,S1" | 0.14 | LC |
| SRR5278374 | pistil | "Balilla,S1" | 0.11 | LC |
| SRR5278377 | pistil | "Balilla,S2" | 0.07 | LC |
| SRR5278376 | pistil | "Balilla,S2" | 0.13 | LC |
| SRR5278379 | pistil | "Balilla,S3" | 0.02 | LC |
| SRR5278378 | pistil | "Balilla,S3" | 0.09 | LC |
| SRR4947492 | root | Al | 0.22 | LC |
| SRR4947493 | root | Al | 0.31 | LC |
| SRR4947496 | root | control | 0.38 | LC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.03 | LC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.04 | LC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.15 | LC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.07 | LC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.09 | LC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.04 | LC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 0.16 | LC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 0.29 | LC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 0.18 | LC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.38 | LC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 0.19 | LC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.28 | LC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.15 | LC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.14 | LC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.16 | LC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.28 | LC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.12 | LC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.25 | LC |
| SRR5126169 | root | "mock,14_days" | 0.15 | LC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 0.14 | LC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.06 | LC |
| SRR5126167 | root | "mock,14_days" | 0.10 | LC |
| SRR5126165 | root | "mock,14_days" | 0.11 | LC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.23 | LC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.14 | LC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.16 | LC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.13 | LC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.06 | LC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.14 | LC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.00 | LC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.07 | LC |
| SRR8240818 | leaf | wild_type | 0.15 | LC |
| SRR8240819 | leaf | wild_type | 0.00 | LC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 0.10 | LC |
| SRR6168975 | leaf | none (control) | 0.14 | LC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.33 | LC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.01 | LC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.40 | LC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.64 | LC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.19 | LC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 0.23 | LC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.30 | LC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.00 | LC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.19 | LC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 0.10 | LC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.08 | LC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.17 | LC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 0.13 | LC |
| SRR8582891 | panicle | PM | 0.06 | LC |
| SRR8582890 | panicle | AM | 0.12 | LC |
| SRR8582893 | panicle | PM | 0.03 | LC |
| SRR8582892 | panicle | PM | 0.03 | LC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.38 | LC |
| SRR6320473 | carpel | wt | 0.85 | LC |
| SRR4457244 | flag_leaf | DAH36 | 0.18 | LC |
| SRR4457241 | flag_leaf | DAH28 | 0.24 | LC |
| SRR4457240 | flag_leaf | DAH28 | 0.22 | LC |
| SRR4457243 | flag_leaf | DAH36 | 0.28 | LC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 2.85 | LC |
| SRR4457249 | 2nd_leaf | DAH4 | 0.12 | LC |
| SRR4457248 | flag_leaf | DAH44 | 0.42 | LC |
| SRR6441554 | seedling | wild_type | 0.18 | LC |
| SRR6441555 | seedling | wild_type | 0.20 | LC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.32 | LC |
| SRR1213694 | root | wt | 0.16 | LC |
| SRR1213696 | endosprem | wt(milk grains) | 0.06 | LC |
| SRR1213691 | flower | wt | 0.15 | LC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.31 | LC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.18 | LC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.26 | LC |
| SRR4947489 | root | control | 0.12 | LC |
| SRR4947488 | root | control | 0.26 | LC |
| SRR4947481 | root | control | 0.08 | LC |
| SRR4947480 | root | control | 0.10 | LC |
| SRR4947485 | root | Al | 0.04 | LC |
| SRR4947484 | root | Al | 0.21 | LC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 0.22 | LC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 0.26 | LC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.17 | LC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 0.14 | LC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.10 | LC |
| SRR8240825 | leaf | wild_type | 0.00 | LC |
| SRR8240820 | leaf | wild_type | 0.04 | LC |
| SRR4457238 | flag_leaf | DAH20 | 0.08 | LC |
| SRR4457239 | flag_leaf | DAH20 | 0.24 | LC |
| SRR4457234 | flag_leaf | DAH12 | 0.18 | LC |
| SRR4457235 | flag_leaf | DAH12 | 0.05 | LC |
| SRR4457236 | flag_leaf | DAH12 | 0.10 | LC |
| SRR4457232 | flag_leaf | DAH4 | 0.09 | LC |
| SRR4457233 | flag_leaf | DAH4 | 0.14 | LC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.15 | LC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.02 | LC |
| SRR5560729 | caryopsis | wild_type | 0.14 | LC |
| SRR6168973 | leaf | none (control) | 0.01 | LC |
| SRR6168974 | leaf | none (control) | 0.09 | LC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 0.11 | LC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.23 | LC |
| SRR6168979 | leaf | none (control) | 0.15 | LC |
| SRR8240826 | leaf | wild_type | 0.00 | LC |
| SRR8060837 | leaf | wild_type | 0.16 | LC |
| SRR6216699 | leaf | nontransgenic rice plant | 0.13 | LC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.11 | LC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.15 | LC |
| SRR2857719 | seedling | drought_stress_0h | 0.20 | LC |
| SRR6320498 | carpel | wt | 0.78 | LC |
| SRR5126148 | root | "mock,1_day" | 0.14 | LC |
| SRR5126149 | root | "mock,1_day" | 0.08 | LC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.45 | LC |
| SRR5126147 | root | "mock,1_day" | 0.17 | LC |
| SRR7265414 | coleoptile | 4dA | 0.42 | LC |
| SRR7265415 | coleoptile | 4dN | 0.52 | LC |
| SRR7265416 | coleoptile | 4dN | 0.35 | LC |
| SRR7265412 | coleoptile | 4dA | 0.14 | LC |
| SRR7265413 | coleoptile | 4dA | 0.36 | LC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.02 | LC |