| SRR1740428 | root_meristematic_zone | wt | 0.38 | LC |
| SRR3209769 | leaf | Watered;Long_Day | 0.12 | LC |
| SRR5856928 | leaf | control | 0.00 | LC |
| SRR5856929 | leaf | control | 0.00 | LC |
| SRR5856927 | leaf | control | 0.00 | LC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.26 | LC |
| SRR5110439 | panicle | Dawn + 7h | 0.08 | LC |
| SRR5110438 | panicle | Dawn + 7h | 0.00 | LC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.00 | LC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.00 | LC |
| SRR5110437 | panicle | Dawn + 7h | 0.00 | LC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.00 | LC |
| SRR5110431 | panicle | Dawn | 0.11 | LC |
| SRR5110430 | panicle | Dawn | 0.00 | LC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.00 | LC |
| SRR5110432 | panicle | Dawn | 0.03 | LC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.00 | LC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.00 | LC |
| SRR1740435 | root_differentiation_zone | wt | 0.00 | LC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.12 | LC |
| SRR3745125 | anther | wt | 0.00 | LC |
| SRR3745126 | anther | wt | 0.00 | LC |
| SRR5560727 | caryopsis | wild_type | 0.15 | LC |
| SRR6417968 | leaf | H2O_control | 0.26 | LC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.43 | LC |
| SRR6417967 | leaf | H2O_control | 0.36 | LC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.00 | LC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.45 | LC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.55 | LC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.00 | LC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.15 | LC |
| SRR4947502 | root | control | 0.00 | LC |
| SRR4947503 | root | control | 0.00 | LC |
| SRR4947506 | root | Al | 0.00 | LC |
| SRR4947507 | root | Al | 0.00 | LC |
| SRR5126153 | root | "mock,7_days" | 0.14 | LC |
| SRR5126157 | root | "mock,7_days" | 0.23 | LC |
| SRR5126155 | root | "mock,7_days" | 0.25 | LC |
| SRR6168980 | leaf | none (control) | 0.06 | LC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.00 | LC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.23 | LC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.12 | LC |
| SRR5110445 | panicle | Dusk | 0.00 | LC |
| SRR5110446 | panicle | Dusk | 0.00 | LC |
| SRR5110447 | panicle | Dusk | 0.03 | LC |
| SRR5110440 | panicle | Dawn + 7h | 0.00 | LC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.00 | LC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.00 | LC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.08 | LC |
| SRR5110448 | panicle | Dusk | 0.19 | LC |
| SRR5110449 | panicle | Dawn + 14h | 0.00 | LC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.06 | LC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.26 | LC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.18 | LC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.25 | LC |
| SRR4947478 | root | control | 0.00 | LC |
| SRR4947479 | root | control | 0.00 | LC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.23 | LC |
| SRR358794 | seedling | wt | 0.18 | LC |
| SRR358793 | seedling | wt | 0.24 | LC |
| SRR2338869 | endosprem | high_temperature | 0.22 | LC |
| SRR2338868 | endosprem | high_temperature | 0.10 | LC |
| SRR6502106 | root | control | 0.21 | LC |
| SRR2338867 | endosprem | control | 0.00 | LC |
| SRR2338866 | endosprem | control | 0.18 | LC |
| SRR3209777 | leaf | Watered;Long_Day | 0.17 | LC |
| SRR3209773 | leaf | Watered;Short_Day | 0.15 | LC |
| SRR3209770 | leaf | Watered;Long_Day | 0.03 | LC |
| SRR3209779 | leaf | Watered;Short_Day | 0.08 | LC |
| SRR5278374 | pistil | "Balilla,S1" | 0.00 | LC |
| SRR5278377 | pistil | "Balilla,S2" | 0.30 | LC |
| SRR5278376 | pistil | "Balilla,S2" | 0.16 | LC |
| SRR5856931 | leaf | salt | 0.00 | LC |
| SRR5856930 | leaf | salt | 0.00 | LC |
| SRR5856933 | leaf | control | 0.00 | LC |
| SRR5856932 | leaf | salt | 0.00 | LC |
| SRR5856937 | leaf | salt | 0.00 | LC |
| SRR5856936 | leaf | salt | 0.00 | LC |
| SRR4947498 | root | Al | 0.00 | LC |
| SRR4947499 | root | Al | 0.00 | LC |
| SRR4947490 | root | Al | 0.00 | LC |
| SRR4947491 | root | Al | 0.00 | LC |
| SRR4947494 | root | control | 0.00 | LC |
| SRR4947495 | root | control | 0.00 | LC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.00 | LC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.05 | LC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.00 | LC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.00 | LC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.00 | LC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.00 | LC |
| SRR8240818 | leaf | wild_type | 0.16 | LC |
| SRR8240819 | leaf | wild_type | 0.00 | LC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 0.00 | LC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.00 | LC |
| SRR1761530 | leaf | control | 0.36 | LC |
| SRR1761531 | leaf | control | 0.30 | LC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.11 | LC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.19 | LC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.55 | LC |
| SRR2154083 | seedling | wt | 0.00 | LC |
| SRR2154082 | seedling | wt | 0.00 | LC |
| SRR2154084 | seedling | wt | 0.00 | LC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.69 | LC |
| SRR1617559 | shoot_apical_meristem | no collect | 0.51 | LC |
| SRR1617550 | shoot_apical_meristem | no collect | 0.45 | LC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.53 | LC |
| SRR1617554 | shoot_apical_meristem | no collect | 0.79 | LC |
| SRR6320473 | carpel | wt | 0.00 | LC |
| SRR5110459 | panicle | Dawn + 21h | 0.00 | LC |
| SRR5110458 | panicle | Dawn + 21h | 0.00 | LC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.02 | LC |
| SRR5110452 | panicle | Dawn + 14h | 0.00 | LC |
| SRR5110451 | panicle | Dawn + 14h | 0.00 | LC |
| SRR5110450 | panicle | Dawn + 14h | 0.00 | LC |
| SRR5110457 | panicle | Dawn + 21h | 0.00 | LC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.00 | LC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.00 | LC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.05 | LC |
| SRR4457247 | flag_leaf | DAH44 | 0.26 | LC |
| SRR4457241 | flag_leaf | DAH28 | 0.20 | LC |
| SRR4457240 | flag_leaf | DAH28 | 0.27 | LC |
| SRR4457242 | flag_leaf | DAH28 | 0.25 | LC |
| SRR4457248 | flag_leaf | DAH44 | 0.26 | LC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.06 | LC |
| SRR1213696 | endosprem | wt(milk grains) | 0.12 | LC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.36 | LC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.30 | LC |
| SRR4947483 | root | Al | 0.00 | LC |
| SRR4947482 | root | Al | 0.00 | LC |
| SRR4947487 | root | control | 0.00 | LC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.27 | LC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.26 | LC |
| SRR6502096 | root | control | 0.25 | LC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 0.00 | LC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 0.00 | LC |
| SRR6053395 | leaf | gibberellic acid (GA) | 0.00 | LC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 0.00 | LC |
| SRR6053397 | leaf | gibberellic acid (GA) | 0.00 | LC |
| SRR6053396 | leaf | gibberellic acid (GA) | 0.00 | LC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 0.00 | LC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 0.00 | LC |
| SRR5110460 | panicle | Dawn + 21h | 0.00 | LC |
| SRR4457238 | flag_leaf | DAH20 | 0.11 | LC |
| SRR4457239 | flag_leaf | DAH20 | 0.00 | LC |
| SRR4457234 | flag_leaf | DAH12 | 0.20 | LC |
| SRR4457235 | flag_leaf | DAH12 | 0.15 | LC |
| SRR4457236 | flag_leaf | DAH12 | 0.15 | LC |
| SRR4457237 | flag_leaf | DAH20 | 0.15 | LC |
| SRR1761529 | leaf | drought | 0.33 | LC |
| SRR3745127 | anther | wt | 0.00 | LC |
| SRR1740436 | root_differentiation_zone | wt | 0.09 | LC |
| SRR6168979 | leaf | none (control) | 0.00 | LC |
| SRR1740434 | root_differentiation_zone | wt | 0.21 | LC |
| SRR1740432 | root_elongation_zone | wt | 0.13 | LC |
| SRR1740433 | root_elongation_zone | wt | 0.09 | LC |
| SRR1740431 | root_elongation_zone | wt | 0.11 | LC |
| SRR8240826 | leaf | wild_type | 0.10 | LC |
| SRR8060835 | leaf | wild_type | 0.00 | LC |
| SRR8060836 | leaf | wild_type | 0.00 | LC |
| SRR8060837 | leaf | wild_type | 0.00 | LC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.54 | LC |
| SRR5110429 | panicle | Dawn | 0.08 | LC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.33 | LC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.33 | LC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.30 | LC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.36 | LC |
| SRR6320498 | carpel | wt | 0.00 | LC |
| SRR5126149 | root | "mock,1_day" | 0.31 | LC |
| SRR5856938 | leaf | salt | 0.00 | LC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.55 | LC |
| SRR7265412 | coleoptile | 4dA | 0.00 | LC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.00 | LC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.25 | LC |
| SRR5856935 | leaf | control | 0.00 | LC |
| SRR5856934 | leaf | control | 0.00 | LC |