| SRR1740428 | root_meristematic_zone | wt | 0.22 | LC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.00 | LC |
| SRR5856927 | leaf | control | 0.18 | LC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.00 | LC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.18 | LC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.15 | LC |
| SRR1740435 | root_differentiation_zone | wt | 0.16 | LC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.16 | LC |
| SRR3745126 | anther | wt | 0.14 | LC |
| SRR6417968 | leaf | H2O_control | 0.34 | LC |
| SRR6417967 | leaf | H2O_control | 0.37 | LC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.00 | LC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.00 | LC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.14 | LC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.00 | LC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.00 | LC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.16 | LC |
| SRR4947508 | root | Al | 0.31 | LC |
| SRR4947509 | root | Al | 0.00 | LC |
| SRR4947500 | root | Al | 0.29 | LC |
| SRR4947503 | root | control | 0.36 | LC |
| SRR4947505 | root | control | 0.35 | LC |
| SRR4947506 | root | Al | 0.27 | LC |
| SRR4947507 | root | Al | 0.00 | LC |
| SRR8582888 | panicle | AM | 0.16 | LC |
| SRR6168980 | leaf | none (control) | 0.09 | LC |
| SRR6502088 | leaf | control | 0.22 | LC |
| SRR6502089 | leaf | control | 0.19 | LC |
| SRR7265409 | coleoptile | 3dN | 0.26 | LC |
| SRR7265408 | coleoptile | 3dA | 0.25 | LC |
| SRR7265403 | coleoptile | 2dN | 0.00 | LC |
| SRR7265406 | coleoptile | 3dA | 0.22 | LC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.00 | LC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.00 | LC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.00 | LC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.38 | LC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.24 | LC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 0.00 | LC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.27 | LC |
| SRR5110440 | panicle | Dawn + 7h | 0.46 | LC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.27 | LC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.31 | LC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.24 | LC |
| SRR358798 | callus | wt | 0.00 | LC |
| SRR358797 | callus | wt | 0.63 | LC |
| SRR358795 | callus | wt | 0.00 | LC |
| SRR2338868 | endosprem | high_temperature | 0.28 | LC |
| SRR6502108 | root | control | 0.18 | LC |
| SRR2338866 | endosprem | control | 0.72 | LC |
| SRR5856930 | leaf | salt | 0.09 | LC |
| SRR5856937 | leaf | salt | 0.12 | LC |
| SRR5856936 | leaf | salt | 0.07 | LC |
| SRR4947498 | root | Al | 0.00 | LC |
| SRR4947491 | root | Al | 0.42 | LC |
| SRR4947496 | root | control | 0.00 | LC |
| SRR4947497 | root | control | 0.38 | LC |
| SRR4947494 | root | control | 0.29 | LC |
| SRR4947495 | root | control | 0.00 | LC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 0.00 | LC |
| SRR5126167 | root | "mock,14_days" | 0.23 | LC |
| SRR6502087 | leaf | 100 mM NaCl | 0.29 | LC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.37 | LC |
| SRR8240818 | leaf | wild_type | 0.19 | LC |
| SRR7265388 | embryo | 12hA | 0.37 | LC |
| SRR7265389 | embryo | 12hA | 0.26 | LC |
| SRR7265384 | embryo | 3hA | 0.00 | LC |
| SRR7265386 | embryo | 3hN | 0.15 | LC |
| SRR7265382 | embryo | 3hA | 0.00 | LC |
| SRR7265383 | embryo | 3hA | 0.00 | LC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.39 | LC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.00 | LC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.00 | LC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 0.33 | LC |
| SRR2154083 | seedling | wt | 0.24 | LC |
| SRR2154087 | seedling | wt | 0.00 | LC |
| SRR2154086 | seedling | wt | 0.00 | LC |
| SRR2154085 | seedling | wt | 0.13 | LC |
| SRR1617559 | shoot_apical_meristem | no collect | 0.00 | LC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.56 | LC |
| SRR1617550 | shoot_apical_meristem | no collect | 0.59 | LC |
| SRR1617554 | shoot_apical_meristem | no collect | 0.00 | LC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.00 | LC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.38 | LC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.37 | LC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 0.36 | LC |
| SRR5110457 | panicle | Dawn + 21h | 0.31 | LC |
| SRR7265375 | embryo | dry seed 0 h | 0.00 | LC |
| SRR4457245 | flag_leaf | DAH36 | 0.22 | LC |
| SRR4457247 | flag_leaf | DAH44 | 0.00 | LC |
| SRR4457246 | flag_leaf | DAH44 | 0.00 | LC |
| SRR4457241 | flag_leaf | DAH28 | 0.09 | LC |
| SRR4457242 | flag_leaf | DAH28 | 0.28 | LC |
| SRR4457249 | 2nd_leaf | DAH4 | 0.24 | LC |
| SRR4457248 | flag_leaf | DAH44 | 0.65 | LC |
| SRR6441554 | seedling | wild_type | 0.00 | LC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.33 | LC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.00 | LC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.51 | LC |
| SRR1213694 | root | wt | 0.13 | LC |
| SRR4947488 | root | control | 0.27 | LC |
| SRR4947481 | root | control | 0.23 | LC |
| SRR4947485 | root | Al | 0.38 | LC |
| SRR4947484 | root | Al | 0.45 | LC |
| SRR4947487 | root | control | 0.31 | LC |
| SRR6502093 | root | 100 mM NaCl | 0.26 | LC |
| SRR6502092 | root | 100 mM NaCl | 0.32 | LC |
| SRR6502091 | root | 100 mM NaCl | 0.31 | LC |
| SRR6502096 | root | control | 0.25 | LC |
| SRR6502095 | root | control | 0.00 | LC |
| SRR6502094 | root | control | 0.31 | LC |
| SRR7265392 | embryo | 12hN | 0.27 | LC |
| SRR7265397 | embryo | 24hN | 0.00 | LC |
| SRR7265396 | embryo | 24hA | 0.00 | LC |
| SRR7265395 | embryo | 24hA | 0.37 | LC |
| SRR7265394 | embryo | 24hA | 0.51 | LC |
| SRR7265399 | embryo | 24hN | 0.00 | LC |
| SRR7265398 | embryo | 24hN | 0.18 | LC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 0.00 | LC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 0.00 | LC |
| SRR6053395 | leaf | gibberellic acid (GA) | 0.00 | LC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 0.00 | LC |
| SRR6053397 | leaf | gibberellic acid (GA) | 0.62 | LC |
| SRR6053396 | leaf | gibberellic acid (GA) | 0.54 | LC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 0.00 | LC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 0.00 | LC |
| SRR4457238 | flag_leaf | DAH20 | 0.30 | LC |
| SRR4457235 | flag_leaf | DAH12 | 0.23 | LC |
| SRR4457236 | flag_leaf | DAH12 | 0.20 | LC |
| SRR4457231 | flag_leaf | DAH4 | 0.23 | LC |
| SRR4457233 | flag_leaf | DAH4 | 0.10 | LC |
| SRR1761529 | leaf | drought | 0.41 | LC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 0.31 | LC |
| SRR3745127 | anther | wt | 0.25 | LC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.00 | LC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.05 | LC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.15 | LC |
| SRR1740436 | root_differentiation_zone | wt | 0.16 | LC |
| SRR1740434 | root_differentiation_zone | wt | 0.24 | LC |
| SRR1740431 | root_elongation_zone | wt | 0.23 | LC |
| SRR1633182 | panicle | WT | 0.00 | LC |
| SRR1633185 | panicle | WT | 0.22 | LC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.41 | LC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.41 | LC |
| SRR2857719 | seedling | drought_stress_0h | 0.33 | LC |
| SRR6320498 | carpel | wt | 0.61 | LC |
| SRR976168 | flag_leaf | wild_type | 0.18 | LC |
| SRR5126148 | root | "mock,1_day" | 0.00 | LC |
| SRR5126149 | root | "mock,1_day" | 0.25 | LC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.45 | LC |
| SRR7265414 | coleoptile | 4dA | 0.00 | LC |
| SRR7265415 | coleoptile | 4dN | 0.00 | LC |
| SRR7265416 | coleoptile | 4dN | 0.20 | LC |
| SRR7265417 | coleoptile | 4dN | 0.00 | LC |
| SRR7265410 | coleoptile | 3dN | 0.26 | LC |
| SRR7265411 | coleoptile | 3dN | 0.18 | LC |
| SRR7265412 | coleoptile | 4dA | 0.00 | LC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.00 | LC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.70 | LC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.31 | LC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.40 | LC |
| SRR7265420 | coleoptile | 3dN1dA | 0.00 | LC |