| SRR5126153 | root | "mock,7_days" | 0.27 | LC |
| SRR1740429 | root_meristematic_zone | wt | 0.11 | LC |
| SRR1740428 | root_meristematic_zone | wt | 0.38 | LC |
| SRR6168981 | leaf | none (control) | 0.19 | LC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.10 | LC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.17 | LC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.00 | LC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.00 | LC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.00 | LC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.19 | LC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 0.17 | LC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 0.12 | LC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.14 | LC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 0.00 | LC |
| SRR5110439 | panicle | Dawn + 7h | 0.31 | LC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.00 | LC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.00 | LC |
| SRR5110431 | panicle | Dawn | 0.08 | LC |
| SRR5110430 | panicle | Dawn | 0.00 | LC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.00 | LC |
| SRR5110432 | panicle | Dawn | 0.00 | LC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.35 | LC |
| SRR1740435 | root_differentiation_zone | wt | 0.00 | LC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.21 | LC |
| SRR3745125 | anther | wt | 0.00 | LC |
| SRR3745126 | anther | wt | 0.15 | LC |
| SRR5560727 | caryopsis | wild_type | 0.21 | LC |
| SRR6417968 | leaf | H2O_control | 0.23 | LC |
| SRR6417967 | leaf | H2O_control | 0.19 | LC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.22 | LC |
| SRR4457266 | 2nd_leaf | DAH44 | 0.27 | LC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.22 | LC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.00 | LC |
| SRR2857720 | seedling | drought_stress_1h | 0.21 | LC |
| SRR4457262 | 2nd_leaf | DAH36 | 0.13 | LC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.46 | LC |
| SRR4457260 | 2nd_leaf | DAH28 | 0.16 | LC |
| SRR4947508 | root | Al | 0.11 | LC |
| SRR4947500 | root | Al | 0.24 | LC |
| SRR4947504 | root | control | 0.14 | LC |
| SRR8582888 | panicle | AM | 0.16 | LC |
| SRR8582889 | panicle | AM | 0.10 | LC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.18 | LC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 0.15 | LC |
| SRR5126157 | root | "mock,7_days" | 0.06 | LC |
| SRR6502088 | leaf | control | 0.20 | LC |
| SRR6502089 | leaf | control | 0.16 | LC |
| SRR7265409 | coleoptile | 3dN | 0.00 | LC |
| SRR7265408 | coleoptile | 3dA | 0.00 | LC |
| SRR7265401 | coleoptile | 2dA | 0.23 | LC |
| SRR7265400 | coleoptile | 2dA | 0.27 | LC |
| SRR7265407 | coleoptile | 3dA | 0.15 | LC |
| SRR7265406 | coleoptile | 3dA | 0.16 | LC |
| SRR7265405 | coleoptile | 2dN | 0.23 | LC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.00 | LC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.46 | LC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.37 | LC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 0.22 | LC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.26 | LC |
| SRR5110445 | panicle | Dusk | 0.15 | LC |
| SRR5110446 | panicle | Dusk | 0.00 | LC |
| SRR5110447 | panicle | Dusk | 0.12 | LC |
| SRR5110440 | panicle | Dawn + 7h | 0.21 | LC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.00 | LC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.23 | LC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.21 | LC |
| SRR5110448 | panicle | Dusk | 0.25 | LC |
| SRR5110449 | panicle | Dawn + 14h | 0.00 | LC |
| SRR4457256 | 2nd_leaf | DAH20 | 0.25 | LC |
| SRR4457257 | 2nd_leaf | DAH20 | 0.36 | LC |
| SRR4457254 | 2nd_leaf | DAH12 | 0.17 | LC |
| SRR4457255 | 2nd_leaf | DAH20 | 0.36 | LC |
| SRR4457252 | 2nd_leaf | DAH12 | 0.08 | LC |
| SRR4457253 | 2nd_leaf | DAH12 | 0.23 | LC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.00 | LC |
| SRR4457251 | 2nd_leaf | DAH4 | 0.12 | LC |
| SRR4457259 | 2nd_leaf | DAH28 | 0.18 | LC |
| SRR358796 | callus | wt | 0.00 | LC |
| SRR358794 | seedling | wt | 0.00 | LC |
| SRR358795 | callus | wt | 0.33 | LC |
| SRR358792 | seedling | wt | 0.00 | LC |
| SRR358793 | seedling | wt | 0.00 | LC |
| SRR358791 | seedling | wt | 0.00 | LC |
| SRR2338869 | endosprem | high_temperature | 0.19 | LC |
| SRR2338868 | endosprem | high_temperature | 0.22 | LC |
| SRR6502108 | root | control | 0.16 | LC |
| SRR6502105 | root | 100 mM NaCl | 0.26 | LC |
| SRR6502107 | root | control | 0.18 | LC |
| SRR6502106 | root | control | 0.00 | LC |
| SRR2338867 | endosprem | control | 0.00 | LC |
| SRR2338866 | endosprem | control | 0.00 | LC |
| SRR3209774 | leaf | Watered;Short_Day | 0.08 | LC |
| SRR3209773 | leaf | Watered;Short_Day | 0.17 | LC |
| SRR3209779 | leaf | Watered;Short_Day | 0.15 | LC |
| SRR5278375 | pistil | "Balilla,S1" | 0.15 | LC |
| SRR5278374 | pistil | "Balilla,S1" | 0.10 | LC |
| SRR5278377 | pistil | "Balilla,S2" | 0.21 | LC |
| SRR4947492 | root | Al | 0.00 | LC |
| SRR4947496 | root | control | 0.35 | LC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.10 | LC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 0.09 | LC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 0.19 | LC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 0.07 | LC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 0.14 | LC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 0.16 | LC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 0.21 | LC |
| SRR5126169 | root | "mock,14_days" | 0.07 | LC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 0.34 | LC |
| SRR5126167 | root | "mock,14_days" | 0.15 | LC |
| SRR5126165 | root | "mock,14_days" | 0.09 | LC |
| SRR8611900 | leaf | Non-inoculated | 0.21 | LC |
| SRR7265389 | embryo | 12hA | 0.24 | LC |
| SRR7265386 | embryo | 3hN | 0.11 | LC |
| SRR7265387 | embryo | 3hN | 0.20 | LC |
| SRR7265380 | embryo | 1hN | 0.32 | LC |
| SRR7265382 | embryo | 3hA | 0.17 | LC |
| SRR7265383 | embryo | 3hA | 0.35 | LC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 0.77 | LC |
| SRR6168975 | leaf | none (control) | 0.30 | LC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 0.20 | LC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.30 | LC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 1.01 | LC |
| SRR1761530 | leaf | control | 0.38 | LC |
| SRR1761531 | leaf | control | 0.23 | LC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 0.10 | LC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 0.22 | LC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 2.37 | LC |
| SRR8582891 | panicle | PM | 0.12 | LC |
| SRR8582890 | panicle | AM | 0.11 | LC |
| SRR8582893 | panicle | PM | 0.13 | LC |
| SRR8582892 | panicle | PM | 0.00 | LC |
| SRR2154083 | seedling | wt | 0.24 | LC |
| SRR2154087 | seedling | wt | 0.22 | LC |
| SRR2154086 | seedling | wt | 0.19 | LC |
| SRR2154085 | seedling | wt | 0.28 | LC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.31 | LC |
| SRR1617559 | shoot_apical_meristem | no collect | 0.64 | LC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.69 | LC |
| SRR1617550 | shoot_apical_meristem | no collect | 0.00 | LC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.00 | LC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.61 | LC |
| SRR1617554 | shoot_apical_meristem | no collect | 0.48 | LC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.00 | LC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.17 | LC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.28 | LC |
| SRR5110459 | panicle | Dawn + 21h | 0.12 | LC |
| SRR5110458 | panicle | Dawn + 21h | 0.00 | LC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.17 | LC |
| SRR5110452 | panicle | Dawn + 14h | 0.00 | LC |
| SRR5110451 | panicle | Dawn + 14h | 0.10 | LC |
| SRR5110450 | panicle | Dawn + 14h | 0.00 | LC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.00 | LC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.00 | LC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.12 | LC |
| SRR7265379 | embryo | 1hN | 0.24 | LC |
| SRR7265375 | embryo | dry seed 0 h | 0.22 | LC |
| SRR7265374 | embryo | dry seed 0 h | 0.28 | LC |
| SRR7265377 | embryo | 1hA | 0.32 | LC |
| SRR4457247 | flag_leaf | DAH44 | 0.00 | LC |
| SRR4457246 | flag_leaf | DAH44 | 0.26 | LC |
| SRR4457241 | flag_leaf | DAH28 | 0.07 | LC |
| SRR4457240 | flag_leaf | DAH28 | 0.00 | LC |
| SRR4457243 | flag_leaf | DAH36 | 0.22 | LC |
| SRR4457242 | flag_leaf | DAH28 | 0.11 | LC |
| SRR4457249 | 2nd_leaf | DAH4 | 0.13 | LC |
| SRR4457248 | flag_leaf | DAH44 | 0.00 | LC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.35 | LC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.00 | LC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 0.50 | LC |
| SRR1213694 | root | wt | 0.14 | LC |
| SRR1213692 | leaf | wt | 0.20 | LC |
| SRR1761790 | leaf | "wild_type,control,2" | 0.38 | LC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.23 | LC |
| SRR4947488 | root | control | 0.00 | LC |
| SRR4947480 | root | control | 0.27 | LC |
| SRR4947484 | root | Al | 0.00 | LC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 1.19 | LC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 0.21 | LC |
| SRR6502093 | root | 100 mM NaCl | 0.34 | LC |
| SRR6502092 | root | 100 mM NaCl | 0.21 | LC |
| SRR6502090 | leaf | control | 0.21 | LC |
| SRR6502097 | leaf | 100 mM NaCl | 0.34 | LC |
| SRR6502096 | root | control | 0.17 | LC |
| SRR6502095 | root | control | 0.31 | LC |
| SRR6502094 | root | control | 0.31 | LC |
| SRR7265391 | embryo | 12hN | 0.43 | LC |
| SRR7265397 | embryo | 24hN | 0.32 | LC |
| SRR7265396 | embryo | 24hA | 0.24 | LC |
| SRR7265395 | embryo | 24hA | 0.12 | LC |
| SRR7265394 | embryo | 24hA | 0.00 | LC |
| SRR8240824 | leaf | wild_type | 0.23 | LC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 0.55 | LC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 0.28 | LC |
| SRR6053395 | leaf | gibberellic acid (GA) | 0.47 | LC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 0.16 | LC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 0.04 | LC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 0.00 | LC |
| SRR5110460 | panicle | Dawn + 21h | 0.11 | LC |
| SRR4457239 | flag_leaf | DAH20 | 0.11 | LC |
| SRR4457234 | flag_leaf | DAH12 | 0.05 | LC |
| SRR4457236 | flag_leaf | DAH12 | 0.09 | LC |
| SRR4457231 | flag_leaf | DAH4 | 0.15 | LC |
| SRR4457232 | flag_leaf | DAH4 | 0.00 | LC |
| SRR4457233 | flag_leaf | DAH4 | 0.17 | LC |
| SRR1761529 | leaf | drought | 0.30 | LC |
| SRR1761528 | leaf | drought | 0.40 | LC |
| SRR3745127 | anther | wt | 0.00 | LC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.13 | LC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.16 | LC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.00 | LC |
| SRR1740436 | root_differentiation_zone | wt | 0.00 | LC |
| SRR1740434 | root_differentiation_zone | wt | 0.00 | LC |
| SRR1944583 | seedling | no_treatment | 0.22 | LC |
| SRR1740432 | root_elongation_zone | wt | 0.15 | LC |
| SRR1740433 | root_elongation_zone | wt | 0.00 | LC |
| SRR1740430 | root_meristematic_zone | wt | 0.16 | LC |
| SRR1740431 | root_elongation_zone | wt | 0.00 | LC |
| SRR1633182 | panicle | WT | 0.25 | LC |
| SRR8060836 | leaf | wild_type | 0.15 | LC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.59 | LC |
| SRR6502102 | leaf | control | 0.28 | LC |
| SRR5110429 | panicle | Dawn | 0.00 | LC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 0.00 | LC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 0.17 | LC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.30 | LC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.40 | LC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.30 | LC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.40 | LC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.23 | LC |
| SRR1761782 | leaf | "wild_type,control,1" | 0.38 | LC |
| SRR2857719 | seedling | drought_stress_0h | 0.14 | LC |
| SRR976168 | flag_leaf | wild_type | 0.00 | LC |
| SRR5126148 | root | "mock,1_day" | 0.15 | LC |
| SRR5126149 | root | "mock,1_day" | 0.22 | LC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.22 | LC |
| SRR5126147 | root | "mock,1_day" | 0.13 | LC |
| SRR2857721 | seedling | drought_stress_6h | 0.10 | LC |
| SRR7265414 | coleoptile | 4dA | 0.15 | LC |
| SRR7265415 | coleoptile | 4dN | 0.37 | LC |
| SRR7265416 | coleoptile | 4dN | 0.12 | LC |
| SRR7265417 | coleoptile | 4dN | 0.30 | LC |
| SRR7265410 | coleoptile | 3dN | 0.14 | LC |
| SRR7265412 | coleoptile | 4dA | 0.22 | LC |
| SRR7265413 | coleoptile | 4dA | 0.46 | LC |
| SRR7265418 | coleoptile | 3dN1dA | 0.00 | LC |
| SRR7265419 | coleoptile | 3dN1dA | 0.11 | LC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 0.19 | LC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.00 | LC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 0.32 | LC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.00 | LC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 0.31 | LC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 0.51 | LC |
| SRR7265420 | coleoptile | 3dN1dA | 0.00 | LC |