| SRR3129125 | spikelet | Wild_type_9522_S5 | 0.21 | LC |
| SRR1740429 | root_meristematic_zone | wt | 0.05 | LC |
| SRR1740428 | root_meristematic_zone | wt | 0.00 | LC |
| SRR6168981 | leaf | none (control) | 0.20 | LC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 0.13 | LC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 0.03 | LC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 0.11 | LC |
| SRR5856928 | leaf | control | 0.00 | LC |
| SRR5856929 | leaf | control | 0.02 | LC |
| SRR5856927 | leaf | control | 0.02 | LC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 0.11 | LC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 0.10 | LC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 0.22 | LC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 0.21 | LC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 0.22 | LC |
| SRR5110439 | panicle | Dawn + 7h | 0.21 | LC |
| SRR5110438 | panicle | Dawn + 7h | 0.31 | LC |
| SRR5110435 | panicle | Dawn + 3.5h | 0.18 | LC |
| SRR5110434 | panicle | Dawn + 3.5h | 0.11 | LC |
| SRR5110437 | panicle | Dawn + 7h | 0.00 | LC |
| SRR5110436 | panicle | Dawn + 3.5h | 0.21 | LC |
| SRR5110431 | panicle | Dawn | 0.18 | LC |
| SRR5110430 | panicle | Dawn | 0.33 | LC |
| SRR5110433 | panicle | Dawn + 3.5h | 0.00 | LC |
| SRR5110432 | panicle | Dawn | 0.11 | LC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 0.14 | LC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 0.13 | LC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 0.15 | LC |
| SRR1740435 | root_differentiation_zone | wt | 0.04 | LC |
| SRR3472897 | root | nontransgenic_rice_plant | 0.03 | LC |
| SRR6417968 | leaf | H2O_control | 0.25 | LC |
| SRR6417969 | leaf | H2O_control | 0.16 | LC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.40 | LC |
| SRR6417967 | leaf | H2O_control | 0.08 | LC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 0.22 | LC |
| SRR4457265 | 2nd_leaf | DAH44 | 0.23 | LC |
| SRR4457264 | 2nd_leaf | DAH44 | 0.30 | LC |
| SRR4457261 | 2nd_leaf | DAH36 | 0.45 | LC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 0.17 | LC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 0.17 | LC |
| SRR4947508 | root | Al | 0.33 | LC |
| SRR4947500 | root | Al | 0.50 | LC |
| SRR4947501 | root | Al | 0.22 | LC |
| SRR4947502 | root | control | 0.17 | LC |
| SRR4947503 | root | control | 0.13 | LC |
| SRR4947506 | root | Al | 0.00 | LC |
| SRR4947507 | root | Al | 0.00 | LC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 0.28 | LC |
| SRR6168980 | leaf | none (control) | 0.00 | LC |
| SRR6502089 | leaf | control | 0.21 | LC |
| SRR7265409 | coleoptile | 3dN | 0.00 | LC |
| SRR7265408 | coleoptile | 3dA | 0.07 | LC |
| SRR7265403 | coleoptile | 2dN | 0.00 | LC |
| SRR7265402 | coleoptile | 2dA | 0.18 | LC |
| SRR7265401 | coleoptile | 2dA | 0.25 | LC |
| SRR7265400 | coleoptile | 2dA | 0.22 | LC |
| SRR7265407 | coleoptile | 3dA | 0.07 | LC |
| SRR7265406 | coleoptile | 3dA | 0.22 | LC |
| SRR7265405 | coleoptile | 2dN | 0.00 | LC |
| SRR7265404 | coleoptile | 2dN | 0.00 | LC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 0.48 | LC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 0.36 | LC |
| SRR5110444 | panicle | Dawn + 10.5h | 0.45 | LC |
| SRR5110445 | panicle | Dusk | 0.12 | LC |
| SRR5110446 | panicle | Dusk | 0.16 | LC |
| SRR5110447 | panicle | Dusk | 0.09 | LC |
| SRR5110440 | panicle | Dawn + 7h | 0.20 | LC |
| SRR5110441 | panicle | Dawn + 10.5h | 0.22 | LC |
| SRR5110442 | panicle | Dawn + 10.5h | 0.00 | LC |
| SRR5110443 | panicle | Dawn + 10.5h | 0.02 | LC |
| SRR5110448 | panicle | Dusk | 0.16 | LC |
| SRR5110449 | panicle | Dawn + 14h | 0.42 | LC |
| SRR4457250 | 2nd_leaf | DAH4 | 0.40 | LC |
| SRR4947478 | root | control | 0.00 | LC |
| SRR4947479 | root | control | 0.00 | LC |
| SRR358794 | seedling | wt | 0.24 | LC |
| SRR358793 | seedling | wt | 0.20 | LC |
| SRR358791 | seedling | wt | 0.40 | LC |
| SRR2338869 | endosprem | high_temperature | 0.34 | LC |
| SRR2338868 | endosprem | high_temperature | 0.22 | LC |
| SRR6502108 | root | control | 0.09 | LC |
| SRR6502105 | root | 100 mM NaCl | 0.25 | LC |
| SRR6502104 | root | 100 mM NaCl | 0.20 | LC |
| SRR6502107 | root | control | 0.09 | LC |
| SRR6502106 | root | control | 0.00 | LC |
| SRR6502101 | leaf | control | 0.20 | LC |
| SRR6502100 | leaf | control | 0.25 | LC |
| SRR2338867 | endosprem | control | 0.20 | LC |
| SRR2338866 | endosprem | control | 0.00 | LC |
| SRR3209771 | leaf | Drought;Long_Day | 0.16 | LC |
| SRR3209778 | leaf | Drought;Long_Day | 0.18 | LC |
| SRR5278375 | pistil | "Balilla,S1" | 0.00 | LC |
| SRR5278374 | pistil | "Balilla,S1" | 0.00 | LC |
| SRR5278377 | pistil | "Balilla,S2" | 0.00 | LC |
| SRR5278376 | pistil | "Balilla,S2" | 0.04 | LC |
| SRR5856931 | leaf | salt | 0.02 | LC |
| SRR5856930 | leaf | salt | 0.02 | LC |
| SRR5856933 | leaf | control | 0.00 | LC |
| SRR5856932 | leaf | salt | 0.02 | LC |
| SRR5278379 | pistil | "Balilla,S3" | 0.19 | LC |
| SRR5278378 | pistil | "Balilla,S3" | 0.18 | LC |
| SRR5856937 | leaf | salt | 0.02 | LC |
| SRR5856936 | leaf | salt | 0.04 | LC |
| SRR4947498 | root | Al | 0.00 | LC |
| SRR4947499 | root | Al | 0.07 | LC |
| SRR4947492 | root | Al | 0.20 | LC |
| SRR4947493 | root | Al | 0.26 | LC |
| SRR4947490 | root | Al | 0.00 | LC |
| SRR4947491 | root | Al | 0.15 | LC |
| SRR4947497 | root | control | 0.25 | LC |
| SRR4947494 | root | control | 0.00 | LC |
| SRR4947495 | root | control | 0.08 | LC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 0.24 | LC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 0.08 | LC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 0.23 | LC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 0.15 | LC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 0.10 | LC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 0.15 | LC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 0.46 | LC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 0.03 | LC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 0.30 | LC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 0.00 | LC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 0.00 | LC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 0.20 | LC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 0.06 | LC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 0.21 | LC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 0.22 | LC |
| SRR6502085 | leaf | 100 mM NaCl | 0.13 | LC |
| SRR6502086 | leaf | 100 mM NaCl | 0.08 | LC |
| SRR6502087 | leaf | 100 mM NaCl | 0.14 | LC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 0.00 | LC |
| SRR8611900 | leaf | Non-inoculated | 0.18 | LC |
| SRR8240818 | leaf | wild_type | 0.06 | LC |
| SRR8240819 | leaf | wild_type | 0.17 | LC |
| SRR7265388 | embryo | 12hA | 0.00 | LC |
| SRR7265389 | embryo | 12hA | 0.05 | LC |
| SRR7265384 | embryo | 3hA | 0.00 | LC |
| SRR7265385 | embryo | 3hN | 0.00 | LC |
| SRR7265386 | embryo | 3hN | 0.00 | LC |
| SRR7265387 | embryo | 3hN | 0.00 | LC |
| SRR7265380 | embryo | 1hN | 0.00 | LC |
| SRR7265381 | embryo | 1hN | 0.00 | LC |
| SRR7265382 | embryo | 3hA | 0.00 | LC |
| SRR7265383 | embryo | 3hA | 0.00 | LC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 0.77 | LC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 0.19 | LC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 0.30 | LC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 0.26 | LC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 0.35 | LC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 0.12 | LC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 0.09 | LC |
| SRR1761531 | leaf | control | 0.23 | LC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 0.18 | LC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 0.19 | LC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 0.15 | LC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 0.14 | LC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 0.31 | LC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 0.15 | LC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 2.60 | LC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 0.57 | LC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 1.89 | LC |
| SRR1617558 | shoot_apical_meristem | no collect | 0.00 | LC |
| SRR1617559 | shoot_apical_meristem | no collect | 0.20 | LC |
| SRR1617553 | shoot_apical_meristem | no collect | 0.00 | LC |
| SRR1617550 | shoot_apical_meristem | no collect | 0.00 | LC |
| SRR1617556 | shoot_apical_meristem | no collect | 0.13 | LC |
| SRR1617557 | shoot_apical_meristem | no collect | 0.00 | LC |
| SRR1617554 | shoot_apical_meristem | no collect | 0.23 | LC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 0.55 | LC |
| SRR6320473 | carpel | wt | 0.00 | LC |
| SRR5110459 | panicle | Dawn + 21h | 0.13 | LC |
| SRR5110458 | panicle | Dawn + 21h | 0.19 | LC |
| SRR5110453 | panicle | Dawn + 17.5h | 0.12 | LC |
| SRR5110452 | panicle | Dawn + 14h | 0.15 | LC |
| SRR5110451 | panicle | Dawn + 14h | 0.17 | LC |
| SRR5110450 | panicle | Dawn + 14h | 0.16 | LC |
| SRR5110457 | panicle | Dawn + 21h | 0.00 | LC |
| SRR5110456 | panicle | Dawn + 17.5h | 0.14 | LC |
| SRR5110455 | panicle | Dawn + 17.5h | 0.18 | LC |
| SRR5110454 | panicle | Dawn + 17.5h | 0.10 | LC |
| SRR7265379 | embryo | 1hN | 0.00 | LC |
| SRR7265378 | embryo | 1hA | 0.00 | LC |
| SRR7265375 | embryo | dry seed 0 h | 0.00 | LC |
| SRR7265374 | embryo | dry seed 0 h | 0.00 | LC |
| SRR7265377 | embryo | 1hA | 0.00 | LC |
| SRR7265376 | embryo | 1hA | 0.00 | LC |
| SRR7265373 | embryo | dry seed 0 h | 0.00 | LC |
| SRR4457247 | flag_leaf | DAH44 | 0.20 | LC |
| SRR4457241 | flag_leaf | DAH28 | 0.17 | LC |
| SRR4457240 | flag_leaf | DAH28 | 0.22 | LC |
| SRR4457242 | flag_leaf | DAH28 | 0.14 | LC |
| SRR4457248 | flag_leaf | DAH44 | 0.21 | LC |
| SRR1213694 | root | wt | 0.08 | LC |
| SRR1213697 | endosprem | wt(mature seeds) | 0.00 | LC |
| SRR1213693 | leaf | wt | 0.12 | LC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 0.30 | LC |
| SRR1761791 | leaf | "wild_type,control,2" | 0.23 | LC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 0.32 | LC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 0.33 | LC |
| SRR4947489 | root | control | 0.31 | LC |
| SRR4947488 | root | control | 0.35 | LC |
| SRR4947480 | root | control | 0.19 | LC |
| SRR4947483 | root | Al | 0.00 | LC |
| SRR4947482 | root | Al | 0.09 | LC |
| SRR4947485 | root | Al | 0.17 | LC |
| SRR4947484 | root | Al | 0.13 | LC |
| SRR4947487 | root | control | 0.00 | LC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 0.27 | LC |
| SRR6502093 | root | 100 mM NaCl | 0.37 | LC |
| SRR6502091 | root | 100 mM NaCl | 0.20 | LC |
| SRR6502090 | leaf | control | 0.11 | LC |
| SRR6502096 | root | control | 0.05 | LC |
| SRR6502095 | root | control | 0.00 | LC |
| SRR6502094 | root | control | 0.00 | LC |
| SRR6502099 | leaf | 100 mM NaCl | 0.13 | LC |
| SRR7265393 | embryo | 12hN | 0.00 | LC |
| SRR7265392 | embryo | 12hN | 0.00 | LC |
| SRR7265391 | embryo | 12hN | 0.00 | LC |
| SRR7265390 | embryo | 12hA | 0.00 | LC |
| SRR7265397 | embryo | 24hN | 0.00 | LC |
| SRR7265396 | embryo | 24hA | 0.07 | LC |
| SRR7265395 | embryo | 24hA | 0.00 | LC |
| SRR7265394 | embryo | 24hA | 0.00 | LC |
| SRR7265399 | embryo | 24hN | 0.00 | LC |
| SRR7265398 | embryo | 24hN | 0.00 | LC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 0.49 | LC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 0.56 | LC |
| SRR6053395 | leaf | gibberellic acid (GA) | 0.00 | LC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 0.00 | LC |
| SRR6053397 | leaf | gibberellic acid (GA) | 0.00 | LC |
| SRR6053396 | leaf | gibberellic acid (GA) | 0.19 | LC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 0.00 | LC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 0.00 | LC |
| SRR5110460 | panicle | Dawn + 21h | 0.29 | LC |
| SRR8240820 | leaf | wild_type | 0.08 | LC |
| SRR4457238 | flag_leaf | DAH20 | 0.26 | LC |
| SRR4457239 | flag_leaf | DAH20 | 0.25 | LC |
| SRR4457236 | flag_leaf | DAH12 | 0.24 | LC |
| SRR1761529 | leaf | drought | 0.30 | LC |
| SRR1761528 | leaf | drought | 0.28 | LC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 0.34 | LC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 0.00 | LC |
| SRR1740436 | root_differentiation_zone | wt | 0.07 | LC |
| SRR6168979 | leaf | none (control) | 0.05 | LC |
| SRR1740434 | root_differentiation_zone | wt | 0.06 | LC |
| SRR1740432 | root_elongation_zone | wt | 0.04 | LC |
| SRR1740433 | root_elongation_zone | wt | 0.02 | LC |
| SRR1740430 | root_meristematic_zone | wt | 0.00 | LC |
| SRR1740431 | root_elongation_zone | wt | 0.00 | LC |
| SRR8240826 | leaf | wild_type | 0.07 | LC |
| SRR1617549 | shoot_apical_meristem | no collect | 0.00 | LC |
| SRR6502103 | root | 100 mM NaCl | 0.25 | LC |
| SRR6502102 | leaf | control | 0.24 | LC |
| SRR5110429 | panicle | Dawn | 0.22 | LC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 4.66 | LC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 1.54 | LC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 3.24 | LC |
| SRR1761789 | leaf | "wild_type,drought,2" | 0.30 | LC |
| SRR1761788 | leaf | "wild_type,drought,2" | 0.28 | LC |
| SRR1761781 | leaf | "wild_type,drought,1" | 0.30 | LC |
| SRR1761780 | leaf | "wild_type,drought,1" | 0.28 | LC |
| SRR1761783 | leaf | "wild_type,control,1" | 0.23 | LC |
| SRR6320498 | carpel | wt | 0.00 | LC |
| SRR976168 | flag_leaf | wild_type | 0.15 | LC |
| SRR5126148 | root | "mock,1_day" | 0.22 | LC |
| SRR5856938 | leaf | salt | 0.02 | LC |
| SRR4457263 | 2nd_leaf | DAH36 | 0.34 | LC |
| SRR7265414 | coleoptile | 4dA | 0.34 | LC |
| SRR7265415 | coleoptile | 4dN | 0.00 | LC |
| SRR7265416 | coleoptile | 4dN | 0.00 | LC |
| SRR7265417 | coleoptile | 4dN | 0.00 | LC |
| SRR7265410 | coleoptile | 3dN | 0.00 | LC |
| SRR7265411 | coleoptile | 3dN | 0.00 | LC |
| SRR7265412 | coleoptile | 4dA | 0.22 | LC |
| SRR7265413 | coleoptile | 4dA | 0.33 | LC |
| SRR3472900 | root | nontransgenic_rice_plant | 0.00 | LC |
| SRR7265418 | coleoptile | 3dN1dA | 0.00 | LC |
| SRR7265419 | coleoptile | 3dN1dA | 0.09 | LC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 0.62 | LC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 0.00 | LC |
| SRR5856935 | leaf | control | 0.06 | LC |
| SRR5856934 | leaf | control | 0.02 | LC |
| SRR7265420 | coleoptile | 3dN1dA | 0.08 | LC |