| SRR9937395 | spikelet | sRNA basal spikelets | 1018.30 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 1594.40 | HC |
| SRR976171 | lamina_joint | wild type | 2038.02 | HC |
| SRR9070102 | shoot_base | WT_base | 47.84 | HC |
| SRR9070101 | shoot_base | WT_base | 65.54 | HC |
| SRR9070100 | shoot_base | WT_base | 83.12 | HC |
| SRR8649147 | panicle | panicle tissue | 369.74 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 1057.59 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 657.15 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 705.93 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 663.15 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 866.08 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 960.06 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 1221.12 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 1018.10 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 1137.88 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 1842.57 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 1103.07 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 1049.67 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 808.44 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 1264.96 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 2382.57 | HC |
| SRR8258051 | leaf_sheath | R_bph | 2567.78 | HC |
| SRR8258050 | leaf_sheath | R_bph | 4218.24 | HC |
| SRR8258048 | leaf_sheath | R_bph | 2037.24 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 187.29 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 1208.70 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 398.52 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 3610.25 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 545.26 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 967.80 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 637.20 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 486.88 | HC |
| SRR7058098 | leaf | rice_RSV | 1232.80 | HC |
| SRR7058097 | leaf | rice_mock | 1456.80 | HC |
| SRR7058096 | leaf | rice_mock | 1379.58 | HC |
| SRR6810106 | panicle | panicle | 434.34 | HC |
| SRR6810105 | panicle | panicle | 444.54 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 894.60 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 839.70 | HC |
| SRR6810102 | seedling | seedling | 1183.56 | HC |
| SRR6810101 | seedling | seedling | 1028.56 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 729.92 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 589.88 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 477.18 | HC |
| SRR6365694 | panicle | Wild type | 435.15 | HC |
| SRR6365693 | panicle | Wild type | 443.25 | HC |
| SRR6365692 | panicle | Wild type | 451.96 | HC |
| SRR6365691 | panicle | Wild type | 538.15 | HC |
| SRR6365690 | seedling | Wild type | 205.95 | HC |
| SRR6365689 | seedling | Wild type | 238.30 | HC |
| SRR5940086 | panicle | Wild type | 492.80 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 1277.52 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 1264.50 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 1075.92 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 1140.32 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 1420.25 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 1634.70 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 582.56 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 1196.20 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 685.20 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 949.96 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 375.06 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 1100.04 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 1091.12 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 1056.20 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 210.10 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 393.24 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 207.40 | HC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 146.48 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 188.80 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 451.32 | HC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 374.40 | HC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 146.67 | HC |
| SRR504362 | leaf | NPB X 93-11 | 111.36 | HC |
| SRR504360 | leaf | Nipponbare | 31.70 | HC |
| SRR447136 | shoot | As(III) 80 uM | 102.15 | HC |
| SRR447135 | shoot | As(III) 20 uM | 167.61 | HC |
| SRR447134 | shoot | As(III) 80 uM | 152.32 | HC |
| SRR447133 | shoot | As(III) 20 uM | 144.12 | HC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 94.71 | HC |
| SRR447130 | root | As(III) 20 uM | 60.45 | HC |
| SRR447128 | root | As(III) 20 uM | 28.44 | HC |
| SRR4098209 | leaf | No treatment | 307.08 | HC |
| SRR4098208 | root | No treatment | 175.05 | HC |
| SRR4098207 | panicle | No treatment | 230.65 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 268.32 | HC |
| SRR4098205 | seedling | Heat (50C) | 255.27 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 182.10 | HC |
| SRR4098203 | seedling | No treatment | 228.33 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 615.24 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 2398.25 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 1713.00 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1370.52 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1806.65 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1478.20 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1880.20 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 2220.95 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 352.88 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1506.84 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 274.44 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 715.44 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 992.82 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 2158.08 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 2295.20 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1010.20 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 2238.75 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1819.88 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 1453.44 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 1556.73 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 2163.84 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 1788.16 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 2118.64 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 924.58 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 1026.48 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 432.88 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 337.80 | HC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 169.29 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 352.80 | HC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 279.16 | HC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 188.28 | HC |
| SRR3203907 | leaf | WT | 3726.30 | HC |
| SRR3140957 | leaf | "45C, 24h" | 1033.62 | HC |
| SRR3140956 | leaf | "45C, 24h" | 495.66 | HC |
| SRR3140954 | leaf | "45C, 12h" | 1023.72 | HC |
| SRR3140953 | leaf | "45C, 0h" | 286.68 | HC |
| SRR3140952 | leaf | "45C, 0h" | 202.80 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 480.63 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 325.74 | HC |
| SRR3130370 | leaf | control 8 hour | 378.93 | HC |
| SRR3130369 | leaf | control 8 hour | 305.67 | HC |
| SRR3130365 | leaf | control 0 hour | 616.72 | HC |
| SRR3110557 | shoot | shoot treated | 1237.92 | HC |
| SRR3110556 | shoot | shoot control | 1007.48 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 193.68 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 1495.77 | HC |
| SRR2862363 | leaf | mock leaf cells | 2335.92 | HC |
| SRR2646855 | panicle | SP | 98.28 | HC |
| SRR2646854 | panicle | SP | 87.72 | HC |
| SRR2646853 | panicle | FP | 237.40 | HC |
| SRR2646852 | panicle | FP | 170.60 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 3105.48 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 4547.95 | HC |
| SRR2544786 | embryo | dry seed | 2555.75 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 545.49 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 350.43 | HC |
| SRR2154077 | seedling | KDM105_seedling | 520.08 | HC |
| SRR2154075 | seed | Taipei309_seed | 627.12 | HC |
| SRR2154074 | seed | Nipponbare_seed | 815.28 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 357.20 | HC |
| SRR2154072 | seed | Rathuwee_seed | 699.33 | HC |
| SRR2154071 | seed | KDM105_seed | 483.88 | HC |
| SRR2154070 | seed | Guangluai4_seed | 501.75 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 283.74 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 835.47 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 908.82 | HC |
| SRR1849773 | leaf | Control 120min | 925.38 | HC |
| SRR1849772 | leaf | Control 120min | 1169.40 | HC |
| SRR1849771 | leaf | Control 120min | 902.61 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 867.00 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 1505.40 | HC |
| SRR1849767 | leaf | Control 30min | 995.56 | HC |
| SRR1849765 | leaf | Control 30min | 1074.65 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 206.28 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 203.92 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 96.81 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 201.95 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 136.80 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 136.04 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 243.12 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 181.24 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 171.60 | HC |
| SRR1740025 | seedling | PK-Control | 114.30 | HC |
| SRR1740024 | seedling | N22-Control | 243.60 | HC |
| SRR1740023 | seedling | IR64-Control | 91.14 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 269.80 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 359.16 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 291.63 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 271.90 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 379.40 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 392.15 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 251.80 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 112.25 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 263.70 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 216.55 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 397.02 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 177.45 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 194.75 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 247.00 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 547.65 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 286.05 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 284.05 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 202.80 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 110.44 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 342.10 | HC |
| SRR10956502 | panicle | WT | 535.60 | HC |
| SRR10956501 | panicle | WT | 535.70 | HC |
| SRR10704059 | leaf | Glyphosate | 307.20 | HC |
| SRR10704057 | leaf | CK | 938.64 | HC |
| SRR10704056 | leaf | CK | 369.54 | HC |
| SRR10704055 | leaf | CK | 297.92 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 910.23 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 300.18 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 1546.48 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 479.61 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 312.18 | HC |
| SRR10690153 | leaf | IRBB5_0h | 324.40 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 533.76 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 314.70 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 330.87 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 559.88 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 232.35 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 232.74 | HC |
| SRR10690144 | leaf | IR24_0h | 1513.88 | HC |
| SRR10690143 | leaf | IR24_0h | 319.68 | HC |
| SRR10690142 | leaf | IR24_0h | 289.92 | HC |
| SRR1061625 | panicle | Heat Stress | 369.05 | HC |
| SRR1061624 | panicle | Normal | 577.55 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 455.76 | HC |
| SRR1061622 | flag_leaf | Normal | 834.99 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 970.50 | HC |
| SRR1061620 | flag_leaf | Normal | 1743.10 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 1544.10 | HC |
| SRR1061618 | flag_leaf | Normal | 1162.68 | HC |
| SRR1061617 | panicle | Heat Stress | 402.72 | HC |
| SRR1061616 | panicle | Normal | 443.88 | HC |
| SRR1061615 | panicle | Heat Stress | 405.42 | HC |
| SRR1061614 | panicle | Normal | 420.35 | HC |
| SRR1061613 | panicle | Heat Stress | 480.84 | HC |
| SRR1061612 | panicle | Normal | 335.34 | HC |
| SRR1013789 | panicle | 93-11_PA | 319.17 | HC |
| SRR1013788 | panicle | LYP9_PA | 354.12 | HC |
| SRR1013787 | panicle | PA64s_PA | 419.22 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 302.74 | HC |
| SRR089622 | panicle | salt | 833.19 | HC |
| SRR089621 | panicle | cold | 1328.85 | HC |
| SRR089620 | panicle | drought | 296.79 | HC |
| SRR089619 | panicle | control | 455.88 | HC |