| SRR9937395 | spikelet | sRNA basal spikelets | 490.95 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 645.75 | HC |
| SRR976171 | lamina_joint | wild type | 832.16 | HC |
| SRR8649147 | panicle | panicle tissue | 24.84 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 1497.60 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 1119.66 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 1034.70 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 1029.21 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 1303.92 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 1104.36 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 822.60 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 679.24 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 738.68 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 1503.84 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 1043.28 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 1243.29 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 884.04 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 1173.22 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 1650.84 | HC |
| SRR8258051 | leaf_sheath | R_bph | 978.26 | HC |
| SRR8258050 | leaf_sheath | R_bph | 1535.91 | HC |
| SRR8258048 | leaf_sheath | R_bph | 1099.84 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 87.69 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 742.50 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 141.12 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 835.92 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 198.26 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 428.80 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 150.28 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 248.76 | HC |
| SRR7058098 | leaf | rice_RSV | 158.05 | HC |
| SRR7058097 | leaf | rice_mock | 122.08 | HC |
| SRR7058096 | leaf | rice_mock | 119.89 | HC |
| SRR6365690 | seedling | Wild type | 38.75 | HC |
| SRR5940086 | panicle | Wild type | 190.68 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 90.75 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 116.08 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 449.00 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 550.30 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 434.72 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 530.05 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 1207.96 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 1843.90 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 527.40 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 726.56 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 674.84 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 1509.92 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 1408.36 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 873.92 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 198.92 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 556.44 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 291.48 | HC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 249.24 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 404.38 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 399.88 | HC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 387.20 | HC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 135.15 | HC |
| SRR504363 | leaf | 93-11 X NPB | 2055.84 | HC |
| SRR504362 | leaf | NPB X 93-11 | 1168.02 | HC |
| SRR504361 | leaf | Nov-93 | 2460.04 | HC |
| SRR504360 | leaf | Nipponbare | 1065.80 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 2116.10 | HC |
| SRR4098209 | leaf | No treatment | 437.44 | HC |
| SRR4098208 | root | No treatment | 151.35 | HC |
| SRR4098207 | panicle | No treatment | 153.75 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 140.44 | HC |
| SRR4098205 | seedling | Heat (50C) | 311.46 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 141.24 | HC |
| SRR4098203 | seedling | No treatment | 189.33 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 280.38 | HC |
| SRR4098172 | seedling | Cold (4C) | 266.36 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 62.95 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 48.04 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 79.40 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 62.68 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 65.30 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 66.40 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 129.96 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 42.40 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 142.80 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 25.46 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 33.16 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 64.20 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 76.20 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 26.08 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 80.45 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 49.12 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 42.92 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 52.35 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 59.68 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 65.68 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 72.72 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 47.88 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 614.40 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 410.28 | HC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 254.34 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 1009.84 | HC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 414.36 | HC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 201.93 | HC |
| SRR3203907 | leaf | WT | 11745.75 | HC |
| SRR3140957 | leaf | "45C, 24h" | 773.46 | HC |
| SRR3140956 | leaf | "45C, 24h" | 398.15 | HC |
| SRR3140953 | leaf | "45C, 0h" | 428.75 | HC |
| SRR3140952 | leaf | "45C, 0h" | 184.76 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 2649.24 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 1357.98 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 3816.39 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 2703.72 | HC |
| SRR3130370 | leaf | control 8 hour | 3671.43 | HC |
| SRR3130369 | leaf | control 8 hour | 3187.26 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 2911.59 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 2652.69 | HC |
| SRR3130366 | leaf | control 0 hour | 2393.28 | HC |
| SRR3130365 | leaf | control 0 hour | 4861.08 | HC |
| SRR3110557 | shoot | shoot treated | 1205.64 | HC |
| SRR3110556 | shoot | shoot control | 1934.48 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 2991.04 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 1551.26 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 16631.64 | HC |
| SRR2862365 | leaf | mock leaf cells | 2056.38 | HC |
| SRR2862364 | leaf | mock leaf cells | 2526.94 | HC |
| SRR2862363 | leaf | mock leaf cells | 20174.00 | HC |
| SRR2646855 | panicle | SP | 88.34 | HC |
| SRR2646854 | panicle | SP | 138.78 | HC |
| SRR2646853 | panicle | FP | 234.56 | HC |
| SRR2646852 | panicle | FP | 261.60 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 359.00 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 653.00 | HC |
| SRR2544786 | embryo | dry seed | 607.65 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 2646.15 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 2730.93 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 1854.51 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 1283.82 | HC |
| SRR2154077 | seedling | KDM105_seedling | 1122.18 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 1217.46 | HC |
| SRR2154075 | seed | Taipei309_seed | 2785.59 | HC |
| SRR2154074 | seed | Nipponbare_seed | 3010.89 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 2853.60 | HC |
| SRR2154072 | seed | Rathuwee_seed | 1761.54 | HC |
| SRR2154071 | seed | KDM105_seed | 1066.22 | HC |
| SRR2154070 | seed | Guangluai4_seed | 2115.93 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 428.07 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 690.00 | HC |
| SRR1849773 | leaf | Control 120min | 622.41 | HC |
| SRR1849772 | leaf | Control 120min | 503.80 | HC |
| SRR1849771 | leaf | Control 120min | 609.18 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 558.45 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 935.20 | HC |
| SRR1849767 | leaf | Control 30min | 524.12 | HC |
| SRR1849765 | leaf | Control 30min | 747.95 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 73.08 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 81.88 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 68.00 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 70.80 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 85.50 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 65.72 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 75.50 | HC |
| SRR1654490 | leaf | wild type | 3949.11 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 1417.38 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 221.84 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 194.94 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 233.65 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 216.20 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 297.80 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 211.35 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 137.60 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 133.80 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 132.95 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 260.55 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 93.30 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 107.80 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 222.40 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 175.40 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 218.60 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 265.40 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 50.04 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 224.75 | HC |
| SRR10956502 | panicle | WT | 286.15 | HC |
| SRR10956501 | panicle | WT | 273.75 | HC |
| SRR10704060 | leaf | Glyphosate | 1578.75 | HC |
| SRR10704059 | leaf | Glyphosate | 279.32 | HC |
| SRR10704058 | leaf | Glyphosate | 2435.25 | HC |
| SRR10704057 | leaf | CK | 1599.65 | HC |
| SRR10704056 | leaf | CK | 735.30 | HC |
| SRR10704055 | leaf | CK | 550.40 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 101.46 | HC |
| SRR10690153 | leaf | IRBB5_0h | 391.28 | HC |
| SRR10690152 | leaf | IRBB5_0h | 141.00 | HC |
| SRR10690151 | leaf | IRBB5_0h | 271.44 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 118.20 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 148.98 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 157.48 | HC |
| SRR10690144 | leaf | IR24_0h | 246.40 | HC |
| SRR10690143 | leaf | IR24_0h | 265.92 | HC |
| SRR10690142 | leaf | IR24_0h | 322.95 | HC |
| SRR1061625 | panicle | Heat Stress | 138.90 | HC |
| SRR1061624 | panicle | Normal | 267.30 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 515.10 | HC |
| SRR1061615 | panicle | Heat Stress | 160.44 | HC |
| SRR1061613 | panicle | Heat Stress | 185.64 | HC |
| SRR1061612 | panicle | Normal | 144.84 | HC |
| SRR1013789 | panicle | 93-11_PA | 2233.89 | HC |
| SRR1013788 | panicle | LYP9_PA | 2631.57 | HC |
| SRR1013787 | panicle | PA64s_PA | 2879.60 | HC |
| SRR1013786 | flag_leaf | 93-11_FL | 2023.06 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 2351.58 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 2140.11 | HC |
| SRR089622 | panicle | salt | 494.55 | HC |
| SRR089621 | panicle | cold | 605.70 | HC |
| SRR089620 | panicle | drought | 250.11 | HC |
| SRR089619 | panicle | control | 504.06 | HC |