| SRR9937395 | spikelet | sRNA basal spikelets | 506.68 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 185.00 | HC |
| SRR976171 | lamina_joint | wild type | 795.92 | HC |
| SRR9070101 | shoot_base | WT_base | 833.64 | HC |
| SRR9070100 | shoot_base | WT_base | 432.29 | HC |
| SRR8649147 | panicle | panicle tissue | 114.44 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 634.75 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 511.08 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 190.72 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 131.02 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 274.50 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 545.56 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 535.68 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 842.15 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 769.64 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 654.64 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 264.48 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 596.58 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 1055.36 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 712.08 | HC |
| SRR8258051 | leaf_sheath | R_bph | 518.28 | HC |
| SRR8258050 | leaf_sheath | R_bph | 514.42 | HC |
| SRR8258048 | leaf_sheath | R_bph | 215.00 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 224.00 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 239.35 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 183.80 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 437.13 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 203.44 | HC |
| SRR7058098 | leaf | rice_RSV | 4861.86 | HC |
| SRR7058097 | leaf | rice_mock | 6370.80 | HC |
| SRR7058096 | leaf | rice_mock | 7246.80 | HC |
| SRR6810106 | panicle | panicle | 507.42 | HC |
| SRR6810105 | panicle | panicle | 416.91 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 1091.30 | HC |
| SRR6810102 | seedling | seedling | 527.89 | HC |
| SRR6810101 | seedling | seedling | 765.58 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 464.96 | HC |
| SRR6498701 | leaf | "WT, Control" | 649.77 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 1492.36 | HC |
| SRR6498699 | leaf | "WT, Control" | 664.32 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 730.77 | HC |
| SRR6365694 | panicle | Wild type | 1572.09 | HC |
| SRR6365693 | panicle | Wild type | 1055.12 | HC |
| SRR6365692 | panicle | Wild type | 566.14 | HC |
| SRR6365691 | panicle | Wild type | 1649.70 | HC |
| SRR6365690 | seedling | Wild type | 29.93 | HC |
| SRR5940086 | panicle | Wild type | 541.24 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 181.26 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 386.70 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 1628.28 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 1308.99 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 1536.44 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 1408.96 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 1297.08 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 1315.84 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 53.49 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 45.48 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 36.54 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 56.76 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 99.99 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 51.28 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 21.40 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 37.35 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 45.02 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 76.74 | HC |
| SRR4098208 | root | No treatment | 214.24 | HC |
| SRR4098207 | panicle | No treatment | 118.58 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 236.16 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 146.25 | HC |
| SRR4098203 | seedling | No treatment | 88.86 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 312.40 | HC |
| SRR4098172 | seedling | Cold (4C) | 142.24 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 56.42 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 81.76 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 89.40 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 130.08 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 58.86 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 118.72 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 58.16 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 240.16 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 82.72 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 263.12 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 91.28 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 60.94 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 65.96 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 156.52 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 103.16 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 127.92 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 45.42 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 119.20 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 79.76 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 112.16 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 162.76 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 196.32 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 130.92 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 65.80 | HC |
| SRR3110557 | shoot | shoot treated | 551.62 | HC |
| SRR3110556 | shoot | shoot control | 299.72 | HC |
| SRR2646855 | panicle | SP | 61.78 | HC |
| SRR2646854 | panicle | SP | 31.16 | HC |
| SRR2646853 | panicle | FP | 104.70 | HC |
| SRR2646852 | panicle | FP | 108.39 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 1329.48 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 652.18 | HC |
| SRR2544786 | embryo | dry seed | 161.79 | HC |
| SRR1849784 | root | Control 120min | 77.42 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 140.84 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 257.04 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 259.16 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 121.47 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 225.44 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 240.68 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 228.68 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 379.56 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 283.96 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 169.64 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 154.80 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 101.60 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 267.10 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 134.40 | HC |
| SRR10956502 | panicle | WT | 868.06 | HC |
| SRR10956501 | panicle | WT | 932.70 | HC |
| SRR10704058 | leaf | Glyphosate | 1416.90 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 4154.91 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1418.48 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1756.53 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 2617.60 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 2557.38 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 664.56 | HC |
| SRR10690153 | leaf | IRBB5_0h | 1601.55 | HC |
| SRR10690152 | leaf | IRBB5_0h | 926.82 | HC |
| SRR10690151 | leaf | IRBB5_0h | 1671.48 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 4523.34 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 1982.10 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 2606.49 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 4404.72 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 562.02 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 1353.54 | HC |
| SRR10690144 | leaf | IR24_0h | 2346.00 | HC |
| SRR10690143 | leaf | IR24_0h | 319.85 | HC |
| SRR10690142 | leaf | IR24_0h | 853.35 | HC |
| SRR1061625 | panicle | Heat Stress | 947.10 | HC |
| SRR1061624 | panicle | Normal | 1281.60 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 2116.41 | HC |
| SRR1061622 | flag_leaf | Normal | 4931.22 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 10258.77 | HC |
| SRR1061620 | flag_leaf | Normal | 5325.12 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 2842.02 | HC |
| SRR1061618 | flag_leaf | Normal | 882.93 | HC |
| SRR1061617 | panicle | Heat Stress | 3308.96 | HC |
| SRR1061616 | panicle | Normal | 2752.12 | HC |
| SRR1061615 | panicle | Heat Stress | 3428.84 | HC |
| SRR1061614 | panicle | Normal | 3047.64 | HC |
| SRR1061613 | panicle | Heat Stress | 2623.26 | HC |
| SRR1061612 | panicle | Normal | 1910.06 | HC |
| SRR1013789 | panicle | 93-11_PA | 34.86 | HC |
| SRR1013788 | panicle | LYP9_PA | 44.31 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 280.20 | HC |
| SRR089622 | panicle | salt | 511.52 | HC |
| SRR089621 | panicle | cold | 539.48 | HC |
| SRR089620 | panicle | drought | 558.28 | HC |
| SRR089619 | panicle | control | 292.24 | HC |