| SRR9937395 | spikelet | sRNA basal spikelets | 1106.08 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 1709.48 | HC |
| SRR976171 | lamina_joint | wild type | 1566.90 | HC |
| SRR9070102 | shoot_base | WT_base | 16.02 | HC |
| SRR9070101 | shoot_base | WT_base | 22.22 | HC |
| SRR9070100 | shoot_base | WT_base | 33.20 | HC |
| SRR8649147 | panicle | panicle tissue | 307.02 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 3087.66 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 2606.94 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 2586.27 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 3187.62 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 4054.92 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 3024.51 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 3547.16 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 2960.76 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 2823.38 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 3754.05 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 3334.26 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 3508.11 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 2150.12 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 3653.84 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 4716.87 | HC |
| SRR8258051 | leaf_sheath | R_bph | 3809.14 | HC |
| SRR8258050 | leaf_sheath | R_bph | 6258.48 | HC |
| SRR8258048 | leaf_sheath | R_bph | 3884.52 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 540.00 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 2212.85 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 567.72 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 4398.25 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 2267.20 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 2485.04 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 1877.90 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 1672.24 | HC |
| SRR7058098 | leaf | rice_RSV | 372.07 | HC |
| SRR7058097 | leaf | rice_mock | 410.45 | HC |
| SRR7058096 | leaf | rice_mock | 354.88 | HC |
| SRR6810106 | panicle | panicle | 2157.85 | HC |
| SRR6810105 | panicle | panicle | 2157.80 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 8064.42 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 7336.98 | HC |
| SRR6810102 | seedling | seedling | 7773.96 | HC |
| SRR6810101 | seedling | seedling | 6546.76 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 3616.82 | HC |
| SRR6498701 | leaf | "WT, Control" | 908.97 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 2779.02 | HC |
| SRR6498699 | leaf | "WT, Control" | 975.65 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 2755.22 | HC |
| SRR6365694 | panicle | Wild type | 1846.40 | HC |
| SRR6365693 | panicle | Wild type | 1999.96 | HC |
| SRR6365692 | panicle | Wild type | 2218.88 | HC |
| SRR6365691 | panicle | Wild type | 2049.72 | HC |
| SRR6365690 | seedling | Wild type | 611.28 | HC |
| SRR6365689 | seedling | Wild type | 616.24 | HC |
| SRR5940086 | panicle | Wild type | 1208.04 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 50.07 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 92.28 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 3856.56 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 7623.65 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 6003.36 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 4255.76 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 5165.90 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 6896.80 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 1252.47 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 1933.40 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 452.31 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 727.80 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 712.96 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 1010.88 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 1100.55 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 876.03 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 567.76 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 671.76 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 266.10 | HC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 189.66 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 567.30 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 506.22 | HC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 297.69 | HC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 92.76 | HC |
| SRR504363 | leaf | 93-11 X NPB | 553.32 | HC |
| SRR504362 | leaf | NPB X 93-11 | 637.50 | HC |
| SRR504361 | leaf | Nov-93 | 490.14 | HC |
| SRR504360 | leaf | Nipponbare | 191.76 | HC |
| SRR447135 | shoot | As(III) 20 uM | 165.96 | HC |
| SRR447134 | shoot | As(III) 80 uM | 122.61 | HC |
| SRR447131 | root | As(III) 80 uM | 65.13 | HC |
| SRR447130 | root | As(III) 20 uM | 127.71 | HC |
| SRR447129 | root | As(III) 80 uM | 22.29 | HC |
| SRR447128 | root | As(III) 20 uM | 39.03 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 93.98 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 812.86 | HC |
| SRR4098209 | leaf | No treatment | 498.15 | HC |
| SRR4098208 | root | No treatment | 566.50 | HC |
| SRR4098207 | panicle | No treatment | 398.48 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 682.56 | HC |
| SRR4098205 | seedling | Heat (50C) | 185.10 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 133.92 | HC |
| SRR4098203 | seedling | No treatment | 384.69 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 1019.40 | HC |
| SRR4098172 | seedling | Cold (4C) | 337.04 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 559.28 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 494.10 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 476.96 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 860.85 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 776.56 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 737.36 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 516.24 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 485.16 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 543.99 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 543.96 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 443.96 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 365.66 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 803.44 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 701.96 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 306.28 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 1023.60 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 727.48 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 681.76 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 539.70 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 1040.28 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 598.71 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 637.80 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 457.42 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 507.24 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 521.79 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 367.14 | HC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 213.45 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 916.80 | HC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 338.25 | HC |
| SRR3234040 | pollen | floret length/mm: 2.50-3.00 | 93.70 | HC |
| SRR3203907 | leaf | WT | 2596.20 | HC |
| SRR3140957 | leaf | "45C, 24h" | 1548.85 | HC |
| SRR3140956 | leaf | "45C, 24h" | 1222.72 | HC |
| SRR3140955 | leaf | "45C, 12h" | 77.37 | HC |
| SRR3140954 | leaf | "45C, 12h" | 984.64 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 578.82 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 277.04 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 1076.46 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 630.22 | HC |
| SRR3130370 | leaf | control 8 hour | 880.59 | HC |
| SRR3130369 | leaf | control 8 hour | 722.49 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 506.22 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 481.53 | HC |
| SRR3130366 | leaf | control 0 hour | 505.70 | HC |
| SRR3130365 | leaf | control 0 hour | 842.70 | HC |
| SRR3110557 | shoot | shoot treated | 2524.72 | HC |
| SRR3110556 | shoot | shoot control | 1439.52 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 377.12 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 2702.16 | HC |
| SRR2862365 | leaf | mock leaf cells | 257.22 | HC |
| SRR2862364 | leaf | mock leaf cells | 301.94 | HC |
| SRR2862363 | leaf | mock leaf cells | 3871.44 | HC |
| SRR2646855 | panicle | SP | 363.66 | HC |
| SRR2646854 | panicle | SP | 587.25 | HC |
| SRR2646853 | panicle | FP | 1128.88 | HC |
| SRR2646852 | panicle | FP | 831.96 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 5592.12 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 6434.36 | HC |
| SRR2544786 | embryo | dry seed | 5605.80 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 379.17 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 701.61 | HC |
| SRR2154077 | seedling | KDM105_seedling | 495.96 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 559.38 | HC |
| SRR2154075 | seed | Taipei309_seed | 284.25 | HC |
| SRR2154074 | seed | Nipponbare_seed | 469.92 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 773.52 | HC |
| SRR2154072 | seed | Rathuwee_seed | 558.21 | HC |
| SRR2154071 | seed | KDM105_seed | 137.26 | HC |
| SRR2154070 | seed | Guangluai4_seed | 334.32 | HC |
| SRR1849784 | root | Control 120min | 84.72 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 318.09 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 956.13 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 1333.68 | HC |
| SRR1849773 | leaf | Control 120min | 1312.32 | HC |
| SRR1849772 | leaf | Control 120min | 1590.75 | HC |
| SRR1849771 | leaf | Control 120min | 1292.46 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 1363.74 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 2419.45 | HC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 300.40 | HC |
| SRR1849767 | leaf | Control 30min | 1664.76 | HC |
| SRR1849765 | leaf | Control 30min | 1822.65 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 907.96 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 877.36 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 476.70 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 986.12 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 744.88 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 787.16 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 1373.50 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 893.79 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 641.88 | HC |
| SRR1654490 | leaf | wild type | 789.75 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 971.18 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 1812.16 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 1455.72 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 1053.24 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 2055.60 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 1720.36 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 1161.64 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 580.56 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 785.32 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 687.40 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 1651.60 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 853.56 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 622.32 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 925.16 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 1168.12 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 1708.84 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 1013.16 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 1650.44 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 1136.12 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 367.53 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 1364.44 | HC |
| SRR10956502 | panicle | WT | 2108.52 | HC |
| SRR10956501 | panicle | WT | 2280.20 | HC |
| SRR10704060 | leaf | Glyphosate | 4924.12 | HC |
| SRR10704059 | leaf | Glyphosate | 563.10 | HC |
| SRR10704058 | leaf | Glyphosate | 6796.36 | HC |
| SRR10704057 | leaf | CK | 2397.44 | HC |
| SRR10704056 | leaf | CK | 1068.32 | HC |
| SRR10704055 | leaf | CK | 786.21 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 4614.18 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1371.95 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 4220.58 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 3816.72 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 4038.12 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 2355.44 | HC |
| SRR10690153 | leaf | IRBB5_0h | 12954.28 | HC |
| SRR10690152 | leaf | IRBB5_0h | 2286.38 | HC |
| SRR10690151 | leaf | IRBB5_0h | 3774.68 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 1996.80 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 3271.11 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 3572.13 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 2914.30 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 3431.67 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 2155.06 | HC |
| SRR10690144 | leaf | IR24_0h | 4594.72 | HC |
| SRR10690143 | leaf | IR24_0h | 3850.52 | HC |
| SRR10690142 | leaf | IR24_0h | 3744.84 | HC |
| SRR1061625 | panicle | Heat Stress | 972.32 | HC |
| SRR1061624 | panicle | Normal | 2802.40 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 4584.88 | HC |
| SRR1061622 | flag_leaf | Normal | 4487.85 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 8537.43 | HC |
| SRR1061620 | flag_leaf | Normal | 10563.64 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 2863.20 | HC |
| SRR1061618 | flag_leaf | Normal | 2319.40 | HC |
| SRR1061617 | panicle | Heat Stress | 4113.96 | HC |
| SRR1061616 | panicle | Normal | 3020.36 | HC |
| SRR1061615 | panicle | Heat Stress | 5186.37 | HC |
| SRR1061614 | panicle | Normal | 3738.20 | HC |
| SRR1061613 | panicle | Heat Stress | 2840.73 | HC |
| SRR1061612 | panicle | Normal | 1738.92 | HC |
| SRR1013789 | panicle | 93-11_PA | 767.46 | HC |
| SRR1013788 | panicle | LYP9_PA | 743.91 | HC |
| SRR1013787 | panicle | PA64s_PA | 889.90 | HC |
| SRR089622 | panicle | salt | 2084.88 | HC |
| SRR089621 | panicle | cold | 2189.22 | HC |
| SRR089620 | panicle | drought | 944.99 | HC |
| SRR089619 | panicle | control | 2093.64 | HC |