| SRR9937395 | spikelet | sRNA basal spikelets | 576.35 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 484.00 | HC |
| SRR976171 | lamina_joint | wild type | 1708.68 | HC |
| SRR9070102 | shoot_base | WT_base | 53.04 | HC |
| SRR9070101 | shoot_base | WT_base | 75.68 | HC |
| SRR9070100 | shoot_base | WT_base | 84.88 | HC |
| SRR8649147 | panicle | panicle tissue | 241.78 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 146.73 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 273.94 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 181.08 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 223.86 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 174.87 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 243.88 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 370.77 | HC |
| SRR8258048 | leaf_sheath | R_bph | 310.12 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 141.28 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 142.50 | HC |
| SRR7058098 | leaf | rice_RSV | 369.53 | HC |
| SRR7058097 | leaf | rice_mock | 256.74 | HC |
| SRR7058096 | leaf | rice_mock | 239.28 | HC |
| SRR6810106 | panicle | panicle | 1003.20 | HC |
| SRR6810105 | panicle | panicle | 813.48 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 2613.93 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 2135.49 | HC |
| SRR6810102 | seedling | seedling | 2073.80 | HC |
| SRR6810101 | seedling | seedling | 1717.68 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 815.36 | HC |
| SRR6498701 | leaf | "WT, Control" | 260.38 | HC |
| SRR6498699 | leaf | "WT, Control" | 449.57 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 480.42 | HC |
| SRR6365694 | panicle | Wild type | 1364.60 | HC |
| SRR6365693 | panicle | Wild type | 1364.30 | HC |
| SRR6365692 | panicle | Wild type | 1638.04 | HC |
| SRR6365691 | panicle | Wild type | 2230.95 | HC |
| SRR6365690 | seedling | Wild type | 572.20 | HC |
| SRR6365689 | seedling | Wild type | 573.60 | HC |
| SRR5940086 | panicle | Wild type | 293.28 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 323.46 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 552.32 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 1186.64 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 1597.15 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 1244.48 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 1210.56 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 1375.70 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 1619.04 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 781.36 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 754.25 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 750.84 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 1087.48 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 431.58 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 1041.44 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 588.00 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 963.20 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 571.82 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 237.12 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 81.32 | HC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 94.20 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 460.72 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 331.80 | HC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 180.08 | HC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 77.37 | HC |
| SRR447136 | shoot | As(III) 80 uM | 209.04 | HC |
| SRR447135 | shoot | As(III) 20 uM | 382.02 | HC |
| SRR447134 | shoot | As(III) 80 uM | 354.92 | HC |
| SRR447133 | shoot | As(III) 20 uM | 159.92 | HC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 306.99 | HC |
| SRR447131 | root | As(III) 80 uM | 404.70 | HC |
| SRR447130 | root | As(III) 20 uM | 386.22 | HC |
| SRR447129 | root | As(III) 80 uM | 62.52 | HC |
| SRR447128 | root | As(III) 20 uM | 133.92 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 96.36 | HC |
| SRR4098207 | panicle | No treatment | 130.20 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 125.24 | HC |
| SRR4098205 | seedling | Heat (50C) | 137.37 | HC |
| SRR4098203 | seedling | No treatment | 118.83 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 187.32 | HC |
| SRR4098172 | seedling | Cold (4C) | 151.32 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 392.85 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 266.49 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 206.00 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 262.85 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 204.48 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 303.30 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 377.15 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 411.16 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 192.48 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 352.16 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 119.78 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 165.28 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 353.16 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 354.85 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 152.72 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 308.05 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 342.40 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 212.12 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 236.19 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 311.56 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 254.04 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 310.64 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 133.22 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 160.36 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 302.32 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 196.36 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 433.64 | HC |
| SRR3234041 | pollen | floret length/mm: 3.80-4.30 | 181.88 | HC |
| SRR3140957 | leaf | "45C, 24h" | 927.60 | HC |
| SRR3140956 | leaf | "45C, 24h" | 588.90 | HC |
| SRR3140955 | leaf | "45C, 12h" | 195.00 | HC |
| SRR3140954 | leaf | "45C, 12h" | 1500.30 | HC |
| SRR3140953 | leaf | "45C, 0h" | 451.26 | HC |
| SRR3140952 | leaf | "45C, 0h" | 927.55 | HC |
| SRR3110557 | shoot | shoot treated | 600.04 | HC |
| SRR3110556 | shoot | shoot control | 304.04 | HC |
| SRR2646855 | panicle | SP | 59.72 | HC |
| SRR2646854 | panicle | SP | 63.42 | HC |
| SRR2646853 | panicle | FP | 148.12 | HC |
| SRR2646852 | panicle | FP | 143.60 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 2821.16 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 3644.40 | HC |
| SRR2544786 | embryo | dry seed | 2452.05 | HC |
| SRR1849784 | root | Control 120min | 61.20 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 425.61 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 680.82 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 948.78 | HC |
| SRR1849773 | leaf | Control 120min | 1167.42 | HC |
| SRR1849772 | leaf | Control 120min | 1044.20 | HC |
| SRR1849771 | leaf | Control 120min | 1037.52 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 1226.10 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 1562.75 | HC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 264.10 | HC |
| SRR1849767 | leaf | Control 30min | 1492.52 | HC |
| SRR1849765 | leaf | Control 30min | 1162.50 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 139.28 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 129.96 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 105.36 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 318.90 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 312.20 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 287.60 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 421.50 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 389.68 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 252.45 | HC |
| SRR1740025 | seedling | PK-Control | 565.71 | HC |
| SRR1740024 | seedling | N22-Control | 849.68 | HC |
| SRR1740023 | seedling | IR64-Control | 549.42 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 704.88 | HC |
| SRR10956502 | panicle | WT | 658.00 | HC |
| SRR10956501 | panicle | WT | 656.85 | HC |
| SRR10704060 | leaf | Glyphosate | 931.26 | HC |
| SRR10704059 | leaf | Glyphosate | 234.10 | HC |
| SRR10704058 | leaf | Glyphosate | 943.35 | HC |
| SRR10704057 | leaf | CK | 868.08 | HC |
| SRR10704056 | leaf | CK | 309.78 | HC |
| SRR10690153 | leaf | IRBB5_0h | 108.92 | HC |
| SRR1061625 | panicle | Heat Stress | 294.95 | HC |
| SRR1061624 | panicle | Normal | 574.00 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 1185.86 | HC |
| SRR1061622 | flag_leaf | Normal | 1723.38 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 2129.97 | HC |
| SRR1061620 | flag_leaf | Normal | 3019.55 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 1440.18 | HC |
| SRR1061618 | flag_leaf | Normal | 1117.64 | HC |
| SRR1061617 | panicle | Heat Stress | 603.21 | HC |
| SRR1061616 | panicle | Normal | 560.96 | HC |
| SRR1061615 | panicle | Heat Stress | 664.77 | HC |
| SRR1061614 | panicle | Normal | 776.25 | HC |
| SRR1061613 | panicle | Heat Stress | 639.24 | HC |
| SRR1061612 | panicle | Normal | 457.86 | HC |
| SRR089622 | panicle | salt | 611.37 | HC |
| SRR089621 | panicle | cold | 597.84 | HC |
| SRR089620 | panicle | drought | 190.31 | HC |
| SRR089619 | panicle | control | 324.57 | HC |