| SRR9937394 | spikelet | sRNA apical spikelets | 738.09 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 427.59 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 271.86 | HC |
| SRR8258070 | leaf_sheath | S_bph feeding_late | 364.17 | HC |
| SRR8258069 | leaf_sheath | S_bph feeding_early | 457.56 | HC |
| SRR8258068 | leaf_sheath | S_bph feeding_early | 454.36 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 331.32 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 435.10 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 649.47 | HC |
| SRR8258059 | leaf_sheath | R_bph_late | 434.10 | HC |
| SRR8258058 | leaf_sheath | R_bph_late | 323.52 | HC |
| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 369.38 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 500.54 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 582.72 | HC |
| SRR8258051 | leaf_sheath | R_bph | 685.98 | HC |
| SRR8258050 | leaf_sheath | R_bph | 892.89 | HC |
| SRR8258048 | leaf_sheath | R_bph | 555.94 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 62.72 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 76.46 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 701.36 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 287.24 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 306.51 | HC |
| SRR6810102 | seedling | seedling | 462.72 | HC |
| SRR6810101 | seedling | seedling | 293.88 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 480.36 | HC |
| SRR6498701 | leaf | "WT, Control" | 239.84 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 436.80 | HC |
| SRR6498699 | leaf | "WT, Control" | 266.25 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 499.84 | HC |
| SRR6365690 | seedling | Wild type | 42.24 | HC |
| SRR5940086 | panicle | Wild type | 192.60 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 109.35 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 308.94 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 252.75 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 57.52 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 49.82 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 38.24 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 69.54 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 90.98 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 60.14 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 55.44 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 58.00 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 31.66 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 35.82 | HC |
| SRR504363 | leaf | 93-11 X NPB | 1374.88 | HC |
| SRR504362 | leaf | NPB X 93-11 | 764.08 | HC |
| SRR504361 | leaf | Nov-93 | 653.52 | HC |
| SRR504360 | leaf | Nipponbare | 1412.54 | HC |
| SRR447135 | shoot | As(III) 20 uM | 142.58 | HC |
| SRR447134 | shoot | As(III) 80 uM | 92.50 | HC |
| SRR447130 | root | As(III) 20 uM | 68.46 | HC |
| SRR4098172 | seedling | Cold (4C) | 136.41 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 164.46 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 103.77 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 78.62 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 64.32 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 58.28 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 47.96 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 161.52 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 94.62 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 71.84 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 84.98 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 61.00 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 89.54 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 125.64 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 133.41 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 56.32 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 84.36 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 69.54 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 52.02 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 163.89 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 113.16 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 76.16 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 54.68 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 61.36 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 37.80 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 44.34 | HC |
| SRR3140957 | leaf | "45C, 24h" | 1087.53 | HC |
| SRR3140956 | leaf | "45C, 24h" | 350.85 | HC |
| SRR3140953 | leaf | "45C, 0h" | 363.27 | HC |
| SRR3140952 | leaf | "45C, 0h" | 239.84 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 530.16 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 469.30 | HC |
| SRR3130370 | leaf | control 8 hour | 432.60 | HC |
| SRR3130369 | leaf | control 8 hour | 367.98 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 307.96 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 282.58 | HC |
| SRR3130366 | leaf | control 0 hour | 375.30 | HC |
| SRR3130365 | leaf | control 0 hour | 593.42 | HC |
| SRR3110557 | shoot | shoot treated | 132.60 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 791.67 | HC |
| SRR2862363 | leaf | mock leaf cells | 1039.88 | HC |
| SRR2646855 | panicle | SP | 67.18 | HC |
| SRR2646854 | panicle | SP | 27.44 | HC |
| SRR2646853 | panicle | FP | 60.58 | HC |
| SRR2646852 | panicle | FP | 35.58 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 190.65 | HC |
| SRR2544786 | embryo | dry seed | 143.31 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 103.94 | HC |
| SRR2154072 | seed | Rathuwee_seed | 50.98 | HC |
| SRR2154071 | seed | KDM105_seed | 30.40 | HC |
| SRR2154070 | seed | Guangluai4_seed | 66.94 | HC |
| SRR1849784 | root | Control 120min | 133.90 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 905.25 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 1266.63 | HC |
| SRR1849773 | leaf | Control 120min | 1243.17 | HC |
| SRR1849772 | leaf | Control 120min | 697.98 | HC |
| SRR1849771 | leaf | Control 120min | 1323.60 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 870.12 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 1143.96 | HC |
| SRR1849767 | leaf | Control 30min | 976.56 | HC |
| SRR1849765 | leaf | Control 30min | 804.30 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 94.71 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 92.10 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 43.50 | HC |
| SRR1740025 | seedling | PK-Control | 58.16 | HC |
| SRR1740024 | seedling | N22-Control | 99.14 | HC |
| SRR1740023 | seedling | IR64-Control | 62.64 | HC |
| SRR1654490 | leaf | wild type | 459.21 | HC |
| SRR12416749 | blade | sRNA_Blade_S5 | 843.09 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 839.67 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 389.25 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 488.88 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 625.98 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 249.78 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 206.88 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 354.51 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 321.60 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 366.57 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 346.41 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 186.12 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 336.54 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 512.64 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 796.65 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 231.84 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 486.60 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 366.27 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 170.82 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 353.67 | HC |
| SRR10956502 | panicle | WT | 183.42 | HC |
| SRR10956501 | panicle | WT | 202.08 | HC |
| SRR10704060 | leaf | Glyphosate | 1130.07 | HC |
| SRR10704058 | leaf | Glyphosate | 1194.24 | HC |
| SRR10704057 | leaf | CK | 888.09 | HC |
| SRR10704056 | leaf | CK | 381.87 | HC |
| SRR10690159 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1468.17 | HC |
| SRR10690158 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 672.75 | HC |
| SRR10690157 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_24h | 2956.26 | HC |
| SRR10690156 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 1041.75 | HC |
| SRR10690155 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 2550.78 | HC |
| SRR10690154 | leaf | IRBB5_Xanthomonas oryzae pv. oryzae_8h | 1321.10 | HC |
| SRR10690153 | leaf | IRBB5_0h | 1741.80 | HC |
| SRR10690152 | leaf | IRBB5_0h | 1181.98 | HC |
| SRR10690151 | leaf | IRBB5_0h | 1237.08 | HC |
| SRR10690150 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 560.54 | HC |
| SRR10690149 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 1822.47 | HC |
| SRR10690148 | leaf | IR24_Xanthomonas oryzae pv. oryzae_24h | 2700.51 | HC |
| SRR10690147 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 1142.28 | HC |
| SRR10690146 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 1465.32 | HC |
| SRR10690145 | leaf | IR24_Xanthomonas oryzae pv. oryzae_8h | 1857.12 | HC |
| SRR10690144 | leaf | IR24_0h | 1519.59 | HC |
| SRR10690143 | leaf | IR24_0h | 2068.20 | HC |
| SRR10690142 | leaf | IR24_0h | 2349.27 | HC |
| SRR1061613 | panicle | Heat Stress | 262.26 | HC |
| SRR1061612 | panicle | Normal | 289.53 | HC |
| SRR1013789 | panicle | 93-11_PA | 122.86 | HC |
| SRR1013788 | panicle | LYP9_PA | 128.90 | HC |
| SRR1013787 | panicle | PA64s_PA | 240.08 | HC |
| SRR089622 | panicle | salt | 359.55 | HC |
| SRR089621 | panicle | cold | 388.35 | HC |
| SRR089620 | panicle | drought | 174.07 | HC |
| SRR089619 | panicle | control | 246.45 | HC |