| SRR5560727 | caryopsis | wild_type | 40.31 | HC |
| SRR5560728 | caryopsis | wild_type | 26.01 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 9.65 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 12.03 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 24.97 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 13.33 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 24.50 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 13.55 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 12.99 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 19.28 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 29.00 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 13.60 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 18.01 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 14.32 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 12.22 | HC |
| SRR1213691 | flower | wt | 22.71 | HC |
| SRR8060835 | leaf | wild_type | 60.52 | HC |
| SRR8060836 | leaf | wild_type | 65.54 | HC |
| SRR8060837 | leaf | wild_type | 58.35 | HC |
| SRR8240824 | leaf | wild_type | 48.37 | HC |
| SRR8240825 | leaf | wild_type | 184.44 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 63.43 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 95.26 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 37.87 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 40.11 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 18.17 | HC |
| SRR504365 | leaf | wt | 63.69 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 272.36 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 19.77 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 28.48 | HC |
| SRR8611900 | leaf | Non-inoculated | 40.64 | HC |
| SRR8611901 | leaf | Non-inoculated | 42.86 | HC |
| SRR8611902 | leaf | Non-inoculated | 38.45 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 293.01 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 279.25 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 262.23 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 29.95 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 26.60 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 46.08 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 19.91 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 35.66 | HC |
| SRR6502088 | leaf | control | 56.23 | HC |
| SRR6502089 | leaf | control | 28.32 | HC |
| SRR6502090 | leaf | control | 14.32 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 88.42 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 76.81 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 53.51 | HC |
| SRR6502100 | leaf | control | 90.81 | HC |
| SRR6502101 | leaf | control | 88.77 | HC |
| SRR6502102 | leaf | control | 118.46 | HC |
| SRR5856927 | leaf | control | 78.04 | HC |
| SRR5856928 | leaf | control | 60.60 | HC |
| SRR5856929 | leaf | control | 63.70 | HC |
| SRR5856930 | leaf | salt | 344.63 | HC |
| SRR5856931 | leaf | salt | 339.66 | HC |
| SRR5856932 | leaf | salt | 255.10 | HC |
| SRR5856933 | leaf | control | 89.77 | HC |
| SRR5856934 | leaf | control | 109.68 | HC |
| SRR5856935 | leaf | control | 131.50 | HC |
| SRR5856936 | leaf | salt | 430.50 | HC |
| SRR5856937 | leaf | salt | 452.27 | HC |
| SRR5856938 | leaf | salt | 385.03 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 193.74 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 165.62 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 168.45 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 45.82 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 39.43 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 35.38 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 214.74 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 234.36 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 223.51 | HC |
| SRR6168973 | leaf | none (control) | 53.39 | HC |
| SRR6168974 | leaf | none (control) | 77.48 | HC |
| SRR6168975 | leaf | none (control) | 62.78 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 89.41 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 143.77 | HC |
| SRR6168979 | leaf | none (control) | 70.88 | HC |
| SRR6168980 | leaf | none (control) | 55.86 | HC |
| SRR6168981 | leaf | none (control) | 236.46 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 256.68 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 287.13 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 196.93 | HC |
| SRR8582888 | panicle | AM | 263.09 | HC |
| SRR8582889 | panicle | AM | 234.01 | HC |
| SRR8582890 | panicle | AM | 145.08 | HC |
| SRR8582891 | panicle | PM | 548.73 | HC |
| SRR8582892 | panicle | PM | 399.81 | HC |
| SRR8582893 | panicle | PM | 436.55 | HC |
| SRR5110429 | panicle | Dawn | 14.70 | HC |
| SRR5110430 | panicle | Dawn | 38.96 | HC |
| SRR5110431 | panicle | Dawn | 34.05 | HC |
| SRR4947496 | root | control | 26.72 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 14.33 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 26.80 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 17.87 | HC |
| SRR5110445 | panicle | Dusk | 24.26 | HC |
| SRR5110449 | panicle | Dawn + 14h | 30.31 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 35.45 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 36.44 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 61.52 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 60.90 | HC |
| SRR5126147 | root | "mock,1_day" | 28.44 | HC |
| SRR5126148 | root | "mock,1_day" | 18.95 | HC |
| SRR5126149 | root | "mock,1_day" | 18.59 | HC |
| SRR5126153 | root | "mock,7_days" | 17.61 | HC |
| SRR5126155 | root | "mock,7_days" | 30.06 | HC |
| SRR5126157 | root | "mock,7_days" | 92.73 | HC |
| SRR5126167 | root | "mock,14_days" | 19.00 | HC |
| SRR5126169 | root | "mock,14_days" | 28.00 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 42.84 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 18.91 | HC |
| SRR1213694 | root | wt | 10.14 | HC |
| SRR4947480 | root | control | 20.62 | HC |
| SRR4947481 | root | control | 29.52 | HC |
| SRR4947482 | root | Al | 13.21 | HC |
| SRR4947484 | root | Al | 19.30 | HC |
| SRR4947485 | root | Al | 38.53 | HC |
| SRR4947488 | root | control | 29.53 | HC |
| SRR4947489 | root | control | 29.83 | HC |
| SRR4947492 | root | Al | 17.00 | HC |
| SRR4947493 | root | Al | 26.10 | HC |
| SRR4947494 | root | control | 13.48 | HC |
| SRR4947497 | root | control | 29.85 | HC |
| SRR4947500 | root | Al | 15.05 | HC |
| SRR4947501 | root | Al | 17.92 | HC |
| SRR4947504 | root | control | 13.40 | HC |
| SRR4947505 | root | control | 15.88 | HC |
| SRR4947508 | root | Al | 18.94 | HC |
| SRR4947509 | root | Al | 19.18 | HC |
| SRR6502091 | root | 100 mM NaCl | 30.74 | HC |
| SRR6502092 | root | 100 mM NaCl | 47.82 | HC |
| SRR6502093 | root | 100 mM NaCl | 37.99 | HC |
| SRR6502094 | root | control | 39.92 | HC |
| SRR6502095 | root | control | 39.16 | HC |
| SRR6502096 | root | control | 43.09 | HC |
| SRR6502103 | root | 100 mM NaCl | 33.61 | HC |
| SRR6502104 | root | 100 mM NaCl | 35.18 | HC |
| SRR6502105 | root | 100 mM NaCl | 36.46 | HC |
| SRR6502106 | root | control | 34.36 | HC |
| SRR6502107 | root | control | 36.46 | HC |
| SRR6502108 | root | control | 14.37 | HC |
| SRR1740434 | root_differentiation_zone | wt | 12.81 | HC |
| SRR6441554 | seedling | wild_type | 49.08 | HC |
| SRR6441555 | seedling | wild_type | 148.09 | HC |
| SRR2154086 | seedling | wt | 105.18 | HC |
| SRR2154082 | seedling | wt | 49.82 | HC |
| SRR2154083 | seedling | wt | 44.24 | HC |
| SRR2154084 | seedling | wt | 87.73 | HC |
| SRR2154085 | seedling | wt | 42.53 | HC |
| SRR2154087 | seedling | wt | 59.87 | HC |
| SRR3098741 | seedling | wt | 80.20 | HC |
| SRR3098742 | seedling | wt | 90.25 | HC |
| SRR3098743 | seedling | wt | 99.85 | HC |
| SRR2857719 | seedling | drought_stress_0h | 22.92 | HC |
| SRR2857720 | seedling | drought_stress_1h | 22.11 | HC |
| SRR2857721 | seedling | drought_stress_6h | 35.07 | HC |
| SRR1944583 | seedling | no_treatment | 97.36 | HC |
| SRR358791 | seedling | wt | 127.76 | HC |
| SRR358792 | seedling | wt | 131.49 | HC |
| SRR358793 | seedling | wt | 49.01 | HC |
| SRR358794 | seedling | wt | 54.23 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 42.06 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 66.80 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 48.37 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 51.72 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 16.30 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 51.41 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 44.82 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 44.23 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 29.05 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 95.23 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 88.01 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 59.02 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 45.39 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 53.77 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 33.39 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 107.85 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 82.27 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 83.95 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 99.81 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 170.05 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 182.63 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 18.43 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 22.36 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 10.46 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 12.87 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 65.91 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 58.00 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 363.42 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 203.47 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 14.48 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 16.20 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 14.97 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 18.87 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 25.45 | HC |