| SRR4457249 | 2nd_leaf | DAH4 | 6.33 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 11.85 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 7.93 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 8.26 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 8.69 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 10.70 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 7.76 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 5.68 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 9.77 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 9.11 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 11.53 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 10.52 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 15.63 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 6.15 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 8.74 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 9.72 | HC |
| SRR358795 | callus | wt | 16.41 | HC |
| SRR358796 | callus | wt | 17.53 | HC |
| SRR6320473 | carpel | wt | 9.31 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 5.02 | HC |
| SRR7265403 | coleoptile | 2dN | 4.67 | HC |
| SRR7265406 | coleoptile | 3dA | 3.78 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 7.11 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 4.96 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 5.77 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 6.40 | HC |
| SRR7265373 | embryo | dry seed 0 h | 4.12 | HC |
| SRR7265384 | embryo | 3hA | 5.43 | HC |
| SRR2338869 | endosprem | high_temperature | 4.86 | HC |
| SRR4457231 | flag_leaf | DAH4 | 5.28 | HC |
| SRR4457232 | flag_leaf | DAH4 | 5.68 | HC |
| SRR4457233 | flag_leaf | DAH4 | 8.18 | HC |
| SRR4457234 | flag_leaf | DAH12 | 8.82 | HC |
| SRR4457235 | flag_leaf | DAH12 | 10.35 | HC |
| SRR4457236 | flag_leaf | DAH12 | 8.28 | HC |
| SRR4457237 | flag_leaf | DAH20 | 9.73 | HC |
| SRR4457238 | flag_leaf | DAH20 | 6.70 | HC |
| SRR4457239 | flag_leaf | DAH20 | 6.77 | HC |
| SRR4457240 | flag_leaf | DAH28 | 10.81 | HC |
| SRR4457241 | flag_leaf | DAH28 | 13.29 | HC |
| SRR4457242 | flag_leaf | DAH28 | 4.52 | HC |
| SRR4457243 | flag_leaf | DAH36 | 10.33 | HC |
| SRR4457244 | flag_leaf | DAH36 | 7.66 | HC |
| SRR4457245 | flag_leaf | DAH36 | 9.02 | HC |
| SRR4457246 | flag_leaf | DAH44 | 7.98 | HC |
| SRR4457247 | flag_leaf | DAH44 | 6.36 | HC |
| SRR4457248 | flag_leaf | DAH44 | 12.56 | HC |
| SRR1213690 | flower | wt(flower buds) | 5.53 | HC |
| SRR1213691 | flower | wt | 8.55 | HC |
| SRR8240818 | leaf | wild_type | 3.55 | HC |
| SRR8240819 | leaf | wild_type | 2.49 | HC |
| SRR8240820 | leaf | wild_type | 2.89 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.60 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.54 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 4.34 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 5.96 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.00 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.45 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 5.85 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 4.45 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.84 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 6.92 | HC |
| SRR504365 | leaf | wt | 10.83 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.49 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.22 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.30 | HC |
| SRR6417969 | leaf | H2O_control | 4.93 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 4.02 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 6.66 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 3.35 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 6.07 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 5.71 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 4.87 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 3.70 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 6.72 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 4.18 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 4.01 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 3.89 | HC |
| SRR1213692 | leaf | wt | 12.94 | HC |
| SRR1213693 | leaf | wt | 8.27 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 7.19 | HC |
| SRR6502088 | leaf | control | 7.80 | HC |
| SRR6502089 | leaf | control | 8.01 | HC |
| SRR6502090 | leaf | control | 5.74 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 5.00 | HC |
| SRR6502102 | leaf | control | 20.19 | HC |
| SRR5856927 | leaf | control | 3.40 | HC |
| SRR5856929 | leaf | control | 2.68 | HC |
| SRR5856931 | leaf | salt | 2.13 | HC |
| SRR5856932 | leaf | salt | 3.61 | HC |
| SRR5856933 | leaf | control | 3.25 | HC |
| SRR5856934 | leaf | control | 4.12 | HC |
| SRR5856935 | leaf | control | 3.13 | HC |
| SRR5856937 | leaf | salt | 2.54 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 10.40 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 14.16 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 17.83 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 8.81 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 9.55 | HC |
| SRR6168975 | leaf | none (control) | 6.31 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 2.86 | HC |
| SRR6168979 | leaf | none (control) | 2.97 | HC |
| SRR6168980 | leaf | none (control) | 2.19 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 2.90 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 3.45 | HC |
| SRR5110430 | panicle | Dawn | 18.33 | HC |
| SRR5110440 | panicle | Dawn + 7h | 6.13 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 6.05 | HC |
| SRR5110452 | panicle | Dawn + 14h | 6.28 | HC |
| SRR5110459 | panicle | Dawn + 21h | 7.00 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.12 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 5.55 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.53 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 5.52 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 5.08 | HC |
| SRR5126153 | root | "mock,7_days" | 5.37 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 5.32 | HC |
| SRR5126165 | root | "mock,14_days" | 5.03 | HC |
| SRR5126167 | root | "mock,14_days" | 4.66 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 4.86 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 5.07 | HC |
| SRR1213694 | root | wt | 5.91 | HC |
| SRR1213695 | root | wt | 9.52 | HC |
| SRR4947491 | root | Al | 6.62 | HC |
| SRR6502091 | root | 100 mM NaCl | 4.92 | HC |
| SRR6502094 | root | control | 11.32 | HC |
| SRR6502095 | root | control | 15.17 | HC |
| SRR6502096 | root | control | 14.62 | HC |
| SRR6502105 | root | 100 mM NaCl | 14.35 | HC |
| SRR6502108 | root | control | 6.19 | HC |
| SRR1740436 | root_differentiation_zone | wt | 10.28 | HC |
| SRR1740431 | root_elongation_zone | wt | 9.78 | HC |
| SRR1740432 | root_elongation_zone | wt | 7.12 | HC |
| SRR1740428 | root_meristematic_zone | wt | 5.58 | HC |
| SRR2154086 | seedling | wt | 4.52 | HC |
| SRR2154087 | seedling | wt | 6.75 | HC |
| SRR3098741 | seedling | wt | 4.69 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.14 | HC |
| SRR2857720 | seedling | drought_stress_1h | 7.05 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.84 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 18.42 | HC |
| SRR358792 | seedling | wt | 35.05 | HC |
| SRR358793 | seedling | wt | 13.77 | HC |
| SRR358794 | seedling | wt | 28.22 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 11.09 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 12.06 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 10.89 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 10.17 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 10.96 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.44 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 11.12 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 11.52 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 19.17 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 25.34 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 29.41 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 17.22 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 23.13 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 22.70 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 18.95 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 18.76 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 24.66 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 12.97 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 22.04 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 23.50 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 3.39 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 4.91 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.62 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 6.88 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 5.65 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 5.40 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.10 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.79 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.17 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.68 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.91 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.13 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.64 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.81 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 24.20 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 25.55 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 34.80 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 8.24 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 24.01 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 13.40 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 25.22 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 29.07 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 30.36 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 36.69 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 4.37 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 4.32 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 8.13 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 9.90 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 8.73 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 7.21 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 8.68 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 4.43 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 5.12 | HC |