| SRR5560729 | caryopsis | wild_type | 16.83 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 12.95 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 11.45 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 4.45 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 13.86 | HC |
| SRR7265400 | coleoptile | 2dA | 31.26 | HC |
| SRR7265401 | coleoptile | 2dA | 9.14 | HC |
| SRR7265402 | coleoptile | 2dA | 11.31 | HC |
| SRR7265403 | coleoptile | 2dN | 13.74 | HC |
| SRR7265404 | coleoptile | 2dN | 6.75 | HC |
| SRR7265405 | coleoptile | 2dN | 6.06 | HC |
| SRR7265406 | coleoptile | 3dA | 9.02 | HC |
| SRR7265407 | coleoptile | 3dA | 33.62 | HC |
| SRR7265408 | coleoptile | 3dA | 8.86 | HC |
| SRR7265409 | coleoptile | 3dN | 8.46 | HC |
| SRR7265410 | coleoptile | 3dN | 10.57 | HC |
| SRR7265411 | coleoptile | 3dN | 8.51 | HC |
| SRR7265415 | coleoptile | 4dN | 13.76 | HC |
| SRR7265416 | coleoptile | 4dN | 11.46 | HC |
| SRR7265417 | coleoptile | 4dN | 11.69 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 21.73 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 25.00 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 21.09 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 16.38 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 34.13 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 15.41 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 6.24 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 35.44 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 15.54 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 31.83 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 7.61 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 26.07 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 56.46 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 48.09 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 49.33 | HC |
| SRR7265394 | embryo | 24hA | 11.49 | HC |
| SRR7265395 | embryo | 24hA | 15.84 | HC |
| SRR7265396 | embryo | 24hA | 13.06 | HC |
| SRR7265397 | embryo | 24hN | 7.28 | HC |
| SRR7265398 | embryo | 24hN | 7.29 | HC |
| SRR7265399 | embryo | 24hN | 7.51 | HC |
| SRR1213690 | flower | wt(flower buds) | 12.55 | HC |
| SRR1213691 | flower | wt | 7.34 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 13.95 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 7.36 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 9.88 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 7.72 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 13.84 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 14.38 | HC |
| SRR5856927 | leaf | control | 4.55 | HC |
| SRR5856928 | leaf | control | 14.55 | HC |
| SRR5856929 | leaf | control | 6.18 | HC |
| SRR5856932 | leaf | salt | 1.99 | HC |
| SRR5856933 | leaf | control | 21.30 | HC |
| SRR5856934 | leaf | control | 16.14 | HC |
| SRR5856935 | leaf | control | 11.84 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 16.45 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 8.28 | HC |
| SRR5110429 | panicle | Dawn | 6.77 | HC |
| SRR5110430 | panicle | Dawn | 5.96 | HC |
| SRR5110431 | panicle | Dawn | 6.61 | HC |
| SRR5110432 | panicle | Dawn | 5.99 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 6.96 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 4.03 | HC |
| SRR5110437 | panicle | Dawn + 7h | 4.69 | HC |
| SRR5110438 | panicle | Dawn + 7h | 6.38 | HC |
| SRR5110440 | panicle | Dawn + 7h | 6.27 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 6.27 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 4.88 | HC |
| SRR5110445 | panicle | Dusk | 5.24 | HC |
| SRR5110447 | panicle | Dusk | 4.94 | HC |
| SRR5110448 | panicle | Dusk | 9.50 | HC |
| SRR5110449 | panicle | Dawn + 14h | 9.55 | HC |
| SRR5110451 | panicle | Dawn + 14h | 5.75 | HC |
| SRR5110452 | panicle | Dawn + 14h | 10.29 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 5.44 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.37 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 9.48 | HC |
| SRR5110457 | panicle | Dawn + 21h | 5.77 | HC |
| SRR5110459 | panicle | Dawn + 21h | 5.67 | HC |
| SRR1633182 | panicle | WT | 13.82 | HC |
| SRR1633185 | panicle | WT | 20.30 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 9.56 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 7.55 | HC |
| SRR5126147 | root | "mock,1_day" | 12.66 | HC |
| SRR5126148 | root | "mock,1_day" | 24.57 | HC |
| SRR5126149 | root | "mock,1_day" | 14.44 | HC |
| SRR5126155 | root | "mock,7_days" | 5.66 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 9.98 | HC |
| SRR5126169 | root | "mock,14_days" | 5.11 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 9.44 | HC |
| SRR4947479 | root | control | 5.14 | HC |
| SRR4947481 | root | control | 7.30 | HC |
| SRR4947484 | root | Al | 6.20 | HC |
| SRR4947489 | root | control | 7.77 | HC |
| SRR4947490 | root | Al | 5.11 | HC |
| SRR4947491 | root | Al | 5.91 | HC |
| SRR4947492 | root | Al | 6.58 | HC |
| SRR4947493 | root | Al | 6.53 | HC |
| SRR4947497 | root | control | 6.93 | HC |
| SRR4947499 | root | Al | 5.75 | HC |
| SRR4947500 | root | Al | 5.98 | HC |
| SRR4947501 | root | Al | 7.20 | HC |
| SRR4947503 | root | control | 5.83 | HC |
| SRR4947504 | root | control | 7.38 | HC |
| SRR4947505 | root | control | 7.15 | HC |
| SRR4947508 | root | Al | 7.63 | HC |
| SRR4947509 | root | Al | 6.21 | HC |
| SRR6502091 | root | 100 mM NaCl | 5.87 | HC |
| SRR6502092 | root | 100 mM NaCl | 10.58 | HC |
| SRR6502095 | root | control | 5.36 | HC |
| SRR6502096 | root | control | 5.59 | HC |
| SRR6502104 | root | 100 mM NaCl | 8.26 | HC |
| SRR6502105 | root | 100 mM NaCl | 4.82 | HC |
| SRR6502107 | root | control | 4.13 | HC |
| SRR6502108 | root | control | 5.29 | HC |
| SRR1740435 | root_differentiation_zone | wt | 27.75 | HC |
| SRR1740436 | root_differentiation_zone | wt | 24.25 | HC |
| SRR1740431 | root_elongation_zone | wt | 27.69 | HC |
| SRR1740432 | root_elongation_zone | wt | 49.15 | HC |
| SRR1740433 | root_elongation_zone | wt | 56.08 | HC |
| SRR1740428 | root_meristematic_zone | wt | 11.04 | HC |
| SRR6441555 | seedling | wild_type | 3.63 | HC |
| SRR2154086 | seedling | wt | 11.38 | HC |
| SRR2154082 | seedling | wt | 12.53 | HC |
| SRR2154083 | seedling | wt | 8.85 | HC |
| SRR2154084 | seedling | wt | 10.22 | HC |
| SRR2154085 | seedling | wt | 5.35 | HC |
| SRR2154087 | seedling | wt | 11.17 | HC |
| SRR2857719 | seedling | drought_stress_0h | 9.88 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 6.17 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 7.28 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 5.96 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 11.74 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.27 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 32.18 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 19.25 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 25.70 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 18.08 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 43.19 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 21.78 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 47.72 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 21.19 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 26.11 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 21.47 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 25.53 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 25.84 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 49.84 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 45.75 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 45.32 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 19.81 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 50.79 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 51.40 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 20.07 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 21.52 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 36.85 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 20.06 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 52.82 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 8.72 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 12.38 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 19.63 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 12.39 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 13.29 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 26.55 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 21.60 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 25.33 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 9.98 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 10.65 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 5.98 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 41.51 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 24.48 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 22.40 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 12.05 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 19.44 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 11.78 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 5.78 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 4.10 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 7.13 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 4.54 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 5.89 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 7.78 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 4.15 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 5.72 | HC |