| SRR358795 | callus | wt | 13.10 | HC |
| SRR358796 | callus | wt | 15.66 | HC |
| SRR358797 | callus | wt | 9.54 | HC |
| SRR358798 | callus | wt | 9.99 | HC |
| SRR5560727 | caryopsis | wild_type | 28.50 | HC |
| SRR5560728 | caryopsis | wild_type | 30.90 | HC |
| SRR5560729 | caryopsis | wild_type | 30.38 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 6.22 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 7.05 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 5.07 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 38.60 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 37.26 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 31.94 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 43.80 | HC |
| SRR2338867 | endosprem | control | 2.40 | HC |
| SRR2338868 | endosprem | high_temperature | 5.21 | HC |
| SRR2338869 | endosprem | high_temperature | 3.65 | HC |
| SRR1213690 | flower | wt(flower buds) | 4.96 | HC |
| SRR1213691 | flower | wt | 8.43 | HC |
| SRR8060835 | leaf | wild_type | 3.10 | HC |
| SRR8060837 | leaf | wild_type | 2.80 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 7.85 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 4.39 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 6.25 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 7.04 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 3.97 | HC |
| SRR8611900 | leaf | Non-inoculated | 3.83 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.70 | HC |
| SRR8611902 | leaf | Non-inoculated | 4.74 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 14.59 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 19.68 | HC |
| SRR6168973 | leaf | none (control) | 33.14 | HC |
| SRR6168974 | leaf | none (control) | 33.26 | HC |
| SRR6168975 | leaf | none (control) | 17.51 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 61.34 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 50.48 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 8.92 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 7.72 | HC |
| SRR4947496 | root | control | 35.77 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.32 | HC |
| SRR1633182 | panicle | WT | 16.19 | HC |
| SRR1633185 | panicle | WT | 14.86 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 3.66 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 4.11 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 9.03 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 9.09 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 24.37 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 31.81 | HC |
| SRR5126147 | root | "mock,1_day" | 19.93 | HC |
| SRR5126148 | root | "mock,1_day" | 20.59 | HC |
| SRR5126149 | root | "mock,1_day" | 17.28 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 21.15 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 16.30 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 11.87 | HC |
| SRR5126153 | root | "mock,7_days" | 15.25 | HC |
| SRR5126155 | root | "mock,7_days" | 19.20 | HC |
| SRR5126157 | root | "mock,7_days" | 11.14 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 24.36 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 17.56 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 23.69 | HC |
| SRR5126165 | root | "mock,14_days" | 10.26 | HC |
| SRR5126167 | root | "mock,14_days" | 8.29 | HC |
| SRR5126169 | root | "mock,14_days" | 19.05 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 31.44 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 19.85 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 40.81 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 12.29 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 7.42 | HC |
| SRR1213694 | root | wt | 4.63 | HC |
| SRR4947480 | root | control | 32.35 | HC |
| SRR4947481 | root | control | 43.26 | HC |
| SRR4947484 | root | Al | 34.35 | HC |
| SRR4947485 | root | Al | 33.17 | HC |
| SRR4947488 | root | control | 36.94 | HC |
| SRR4947489 | root | control | 36.66 | HC |
| SRR4947492 | root | Al | 31.05 | HC |
| SRR4947493 | root | Al | 31.27 | HC |
| SRR4947497 | root | control | 40.42 | HC |
| SRR4947500 | root | Al | 34.17 | HC |
| SRR4947501 | root | Al | 48.43 | HC |
| SRR4947504 | root | control | 41.33 | HC |
| SRR4947505 | root | control | 36.60 | HC |
| SRR4947508 | root | Al | 22.13 | HC |
| SRR4947509 | root | Al | 29.69 | HC |
| SRR6502091 | root | 100 mM NaCl | 9.86 | HC |
| SRR6502092 | root | 100 mM NaCl | 15.72 | HC |
| SRR6502093 | root | 100 mM NaCl | 14.10 | HC |
| SRR6502094 | root | control | 10.36 | HC |
| SRR6502095 | root | control | 8.78 | HC |
| SRR6502096 | root | control | 8.11 | HC |
| SRR6502103 | root | 100 mM NaCl | 9.95 | HC |
| SRR6502104 | root | 100 mM NaCl | 10.96 | HC |
| SRR6502105 | root | 100 mM NaCl | 20.39 | HC |
| SRR6502106 | root | control | 7.72 | HC |
| SRR6502107 | root | control | 7.12 | HC |
| SRR6502108 | root | control | 8.62 | HC |
| SRR1740434 | root_differentiation_zone | wt | 14.76 | HC |
| SRR1740435 | root_differentiation_zone | wt | 6.80 | HC |
| SRR1740436 | root_differentiation_zone | wt | 10.97 | HC |
| SRR1740431 | root_elongation_zone | wt | 10.35 | HC |
| SRR1740432 | root_elongation_zone | wt | 10.39 | HC |
| SRR1740433 | root_elongation_zone | wt | 13.12 | HC |
| SRR1740428 | root_meristematic_zone | wt | 7.56 | HC |
| SRR1740429 | root_meristematic_zone | wt | 7.93 | HC |
| SRR1740430 | root_meristematic_zone | wt | 11.39 | HC |
| SRR6441554 | seedling | wild_type | 6.08 | HC |
| SRR6441555 | seedling | wild_type | 4.98 | HC |
| SRR2154086 | seedling | wt | 10.53 | HC |
| SRR2154085 | seedling | wt | 8.30 | HC |
| SRR2154087 | seedling | wt | 8.14 | HC |
| SRR3098742 | seedling | wt | 4.11 | HC |
| SRR3098743 | seedling | wt | 3.49 | HC |
| SRR2857719 | seedling | drought_stress_0h | 4.60 | HC |
| SRR1944583 | seedling | no_treatment | 4.90 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 6.05 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 4.70 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.57 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 3.50 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 5.18 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 4.09 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 19.62 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 15.98 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 21.36 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 16.81 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 18.90 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 14.73 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 15.64 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 10.02 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 17.02 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 18.72 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 11.73 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 14.81 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 13.54 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 18.09 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 13.31 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 16.54 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 16.67 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 13.60 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 16.00 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 12.36 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 12.39 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 19.12 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 9.19 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 9.33 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 12.63 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 11.12 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 8.34 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 42.52 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 45.86 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 51.43 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 38.10 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 41.77 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 38.16 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 48.15 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 50.12 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 64.48 | HC |