| SRR4457249 | 2nd_leaf | DAH4 | 56.07 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 54.29 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 36.18 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 51.05 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 63.98 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 54.30 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 26.47 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 51.26 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 55.80 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 25.82 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 97.09 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 28.89 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 90.56 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 101.20 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 71.01 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 98.62 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 83.71 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 74.86 | HC |
| SRR3745125 | anther | wt | 86.37 | HC |
| SRR3745126 | anther | wt | 74.22 | HC |
| SRR3745127 | anther | wt | 73.12 | HC |
| SRR358795 | callus | wt | 51.47 | HC |
| SRR358796 | callus | wt | 50.16 | HC |
| SRR358797 | callus | wt | 54.48 | HC |
| SRR358798 | callus | wt | 53.20 | HC |
| SRR6320473 | carpel | wt | 120.58 | HC |
| SRR6320498 | carpel | wt | 110.93 | HC |
| SRR5560727 | caryopsis | wild_type | 51.24 | HC |
| SRR5560728 | caryopsis | wild_type | 50.12 | HC |
| SRR5560729 | caryopsis | wild_type | 57.63 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 94.61 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 113.21 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 109.79 | HC |
| SRR4947495 | root | control | 49.09 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 113.81 | HC |
| SRR7265400 | coleoptile | 2dA | 100.11 | HC |
| SRR7265401 | coleoptile | 2dA | 99.52 | HC |
| SRR7265402 | coleoptile | 2dA | 97.82 | HC |
| SRR7265403 | coleoptile | 2dN | 65.11 | HC |
| SRR7265404 | coleoptile | 2dN | 56.38 | HC |
| SRR7265405 | coleoptile | 2dN | 59.82 | HC |
| SRR7265406 | coleoptile | 3dA | 134.95 | HC |
| SRR7265407 | coleoptile | 3dA | 125.72 | HC |
| SRR7265408 | coleoptile | 3dA | 89.73 | HC |
| SRR7265409 | coleoptile | 3dN | 86.65 | HC |
| SRR7265410 | coleoptile | 3dN | 73.04 | HC |
| SRR7265411 | coleoptile | 3dN | 73.02 | HC |
| SRR7265412 | coleoptile | 4dA | 74.37 | HC |
| SRR7265413 | coleoptile | 4dA | 96.70 | HC |
| SRR7265414 | coleoptile | 4dA | 80.98 | HC |
| SRR7265415 | coleoptile | 4dN | 94.10 | HC |
| SRR7265416 | coleoptile | 4dN | 79.85 | HC |
| SRR7265417 | coleoptile | 4dN | 80.13 | HC |
| SRR7265418 | coleoptile | 3dN1dA | 153.58 | HC |
| SRR7265419 | coleoptile | 3dN1dA | 136.38 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 134.13 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 75.01 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 56.41 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 60.34 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 81.44 | HC |
| SRR4104647 | crown | "Zn_Efficient,8_days_of_treatment" | 51.45 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 79.87 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 57.91 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 103.76 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 47.33 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 51.96 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 72.94 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 44.62 | HC |
| SRR7265373 | embryo | dry seed 0 h | 43.23 | HC |
| SRR7265374 | embryo | dry seed 0 h | 50.37 | HC |
| SRR7265375 | embryo | dry seed 0 h | 15.17 | HC |
| SRR7265376 | embryo | 1hA | 32.21 | HC |
| SRR7265377 | embryo | 1hA | 35.03 | HC |
| SRR7265378 | embryo | 1hA | 38.67 | HC |
| SRR7265379 | embryo | 1hN | 35.78 | HC |
| SRR7265380 | embryo | 1hN | 37.95 | HC |
| SRR7265381 | embryo | 1hN | 38.40 | HC |
| SRR7265382 | embryo | 3hA | 32.20 | HC |
| SRR7265383 | embryo | 3hA | 34.83 | HC |
| SRR7265384 | embryo | 3hA | 32.18 | HC |
| SRR7265385 | embryo | 3hN | 33.91 | HC |
| SRR7265386 | embryo | 3hN | 31.72 | HC |
| SRR7265387 | embryo | 3hN | 29.25 | HC |
| SRR7265388 | embryo | 12hA | 76.66 | HC |
| SRR7265389 | embryo | 12hA | 78.65 | HC |
| SRR7265390 | embryo | 12hA | 70.47 | HC |
| SRR7265391 | embryo | 12hN | 61.32 | HC |
| SRR7265392 | embryo | 12hN | 54.07 | HC |
| SRR7265393 | embryo | 12hN | 58.88 | HC |
| SRR7265394 | embryo | 24hA | 97.20 | HC |
| SRR7265395 | embryo | 24hA | 90.50 | HC |
| SRR7265396 | embryo | 24hA | 83.87 | HC |
| SRR7265397 | embryo | 24hN | 63.87 | HC |
| SRR7265398 | embryo | 24hN | 60.23 | HC |
| SRR7265399 | embryo | 24hN | 51.13 | HC |
| SRR2338866 | endosprem | control | 46.01 | HC |
| SRR2338867 | endosprem | control | 26.59 | HC |
| SRR2338868 | endosprem | high_temperature | 24.96 | HC |
| SRR2338869 | endosprem | high_temperature | 26.51 | HC |
| SRR976168 | flag_leaf | wild_type | 114.89 | HC |
| SRR4457231 | flag_leaf | DAH4 | 51.27 | HC |
| SRR4457232 | flag_leaf | DAH4 | 44.31 | HC |
| SRR4457233 | flag_leaf | DAH4 | 39.52 | HC |
| SRR4457234 | flag_leaf | DAH12 | 87.67 | HC |
| SRR4457235 | flag_leaf | DAH12 | 67.85 | HC |
| SRR4457236 | flag_leaf | DAH12 | 85.24 | HC |
| SRR4457237 | flag_leaf | DAH20 | 97.17 | HC |
| SRR4457238 | flag_leaf | DAH20 | 91.65 | HC |
| SRR4457239 | flag_leaf | DAH20 | 100.89 | HC |
| SRR4457240 | flag_leaf | DAH28 | 62.57 | HC |
| SRR4457241 | flag_leaf | DAH28 | 129.46 | HC |
| SRR4457242 | flag_leaf | DAH28 | 28.46 | HC |
| SRR4457243 | flag_leaf | DAH36 | 77.07 | HC |
| SRR4457244 | flag_leaf | DAH36 | 33.67 | HC |
| SRR4457245 | flag_leaf | DAH36 | 73.48 | HC |
| SRR4457246 | flag_leaf | DAH44 | 33.38 | HC |
| SRR4457247 | flag_leaf | DAH44 | 83.74 | HC |
| SRR4457248 | flag_leaf | DAH44 | 145.41 | HC |
| SRR1213690 | flower | wt(flower buds) | 101.11 | HC |
| SRR1213691 | flower | wt | 110.78 | HC |
| SRR8060835 | leaf | wild_type | 216.64 | HC |
| SRR8060836 | leaf | wild_type | 205.83 | HC |
| SRR8060837 | leaf | wild_type | 222.20 | HC |
| SRR8240824 | leaf | wild_type | 37.91 | HC |
| SRR8240825 | leaf | wild_type | 28.23 | HC |
| SRR8240826 | leaf | wild_type | 42.43 | HC |
| SRR8240818 | leaf | wild_type | 21.80 | HC |
| SRR8240819 | leaf | wild_type | 36.35 | HC |
| SRR8240820 | leaf | wild_type | 43.94 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 102.90 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 118.11 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 132.79 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 131.99 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 59.85 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 145.93 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 168.73 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 58.02 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 134.11 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 72.18 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 75.26 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 129.21 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 144.60 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 69.74 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 129.36 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 179.08 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 76.58 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 109.17 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 120.28 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 118.67 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 163.31 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 95.58 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 70.67 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 79.84 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 160.27 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 154.62 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 132.05 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 166.86 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 156.29 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 119.54 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 134.63 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 179.65 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 74.74 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 157.60 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 80.31 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 149.19 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 162.40 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 132.58 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 122.69 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 136.77 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 127.98 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 130.06 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 101.81 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 98.25 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 127.97 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 130.06 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 101.81 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 98.25 | HC |
| SRR1761528 | leaf | drought | 127.97 | HC |
| SRR1761529 | leaf | drought | 130.07 | HC |
| SRR1761530 | leaf | control | 101.81 | HC |
| SRR1761531 | leaf | control | 98.25 | HC |
| SRR504365 | leaf | wt | 137.92 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 92.27 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 94.11 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 81.39 | HC |
| SRR6417967 | leaf | H2O_control | 71.68 | HC |
| SRR6417968 | leaf | H2O_control | 76.83 | HC |
| SRR6417969 | leaf | H2O_control | 74.81 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 60.91 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 70.97 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 72.07 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 82.01 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 75.45 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 86.82 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 81.08 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 94.02 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 74.54 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 81.93 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 71.94 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 69.96 | HC |
| SRR8611900 | leaf | Non-inoculated | 104.01 | HC |
| SRR8611901 | leaf | Non-inoculated | 110.85 | HC |
| SRR8611902 | leaf | Non-inoculated | 83.94 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 157.30 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 166.27 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 159.03 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 138.13 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 76.79 | HC |
| SRR1213692 | leaf | wt | 241.86 | HC |
| SRR1213693 | leaf | wt | 162.59 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 140.57 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 154.98 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 144.40 | HC |
| SRR6502088 | leaf | control | 150.54 | HC |
| SRR6502089 | leaf | control | 131.68 | HC |
| SRR6502090 | leaf | control | 135.91 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 147.00 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 151.14 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 82.56 | HC |
| SRR6502100 | leaf | control | 138.51 | HC |
| SRR6502101 | leaf | control | 125.26 | HC |
| SRR6502102 | leaf | control | 138.77 | HC |
| SRR5856927 | leaf | control | 39.26 | HC |
| SRR5856928 | leaf | control | 41.18 | HC |
| SRR5856929 | leaf | control | 41.05 | HC |
| SRR5856930 | leaf | salt | 25.60 | HC |
| SRR5856931 | leaf | salt | 29.06 | HC |
| SRR5856932 | leaf | salt | 28.20 | HC |
| SRR5856933 | leaf | control | 37.81 | HC |
| SRR5856934 | leaf | control | 41.74 | HC |
| SRR5856935 | leaf | control | 43.22 | HC |
| SRR5856936 | leaf | salt | 33.33 | HC |
| SRR5856937 | leaf | salt | 32.48 | HC |
| SRR5856938 | leaf | salt | 36.10 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 99.88 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 87.33 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 80.97 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 96.31 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 104.04 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 99.18 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 94.84 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 95.19 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 98.61 | HC |
| SRR6168973 | leaf | none (control) | 58.48 | HC |
| SRR6168974 | leaf | none (control) | 57.28 | HC |
| SRR6168975 | leaf | none (control) | 58.37 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 43.94 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 53.23 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 57.37 | HC |
| SRR6168979 | leaf | none (control) | 62.54 | HC |
| SRR6168980 | leaf | none (control) | 42.61 | HC |
| SRR6168981 | leaf | none (control) | 54.71 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 54.22 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 41.61 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 57.50 | HC |
| SRR8582888 | panicle | AM | 58.14 | HC |
| SRR8582889 | panicle | AM | 37.93 | HC |
| SRR8582890 | panicle | AM | 64.57 | HC |
| SRR8582891 | panicle | PM | 175.27 | HC |
| SRR8582892 | panicle | PM | 177.10 | HC |
| SRR8582893 | panicle | PM | 111.79 | HC |
| SRR5110429 | panicle | Dawn | 75.80 | HC |
| SRR5110430 | panicle | Dawn | 52.48 | HC |
| SRR5110431 | panicle | Dawn | 64.71 | HC |
| SRR5110432 | panicle | Dawn | 57.55 | HC |
| SRR4947496 | root | control | 70.50 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 62.97 | HC |
| SRR5110434 | panicle | Dawn + 3.5h | 72.43 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 70.84 | HC |
| SRR5110436 | panicle | Dawn + 3.5h | 55.06 | HC |
| SRR5110437 | panicle | Dawn + 7h | 85.12 | HC |
| SRR5110438 | panicle | Dawn + 7h | 75.26 | HC |
| SRR5110439 | panicle | Dawn + 7h | 58.37 | HC |
| SRR5110440 | panicle | Dawn + 7h | 91.13 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 78.89 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 109.71 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 113.75 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 101.42 | HC |
| SRR5110445 | panicle | Dusk | 87.61 | HC |
| SRR5110446 | panicle | Dusk | 101.05 | HC |
| SRR5110447 | panicle | Dusk | 93.16 | HC |
| SRR5110448 | panicle | Dusk | 97.09 | HC |
| SRR5110449 | panicle | Dawn + 14h | 71.97 | HC |
| SRR5110450 | panicle | Dawn + 14h | 60.30 | HC |
| SRR5110451 | panicle | Dawn + 14h | 80.83 | HC |
| SRR5110452 | panicle | Dawn + 14h | 98.22 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 79.59 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 68.95 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 73.55 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 85.05 | HC |
| SRR5110457 | panicle | Dawn + 21h | 76.33 | HC |
| SRR5110458 | panicle | Dawn + 21h | 53.29 | HC |
| SRR5110459 | panicle | Dawn + 21h | 66.21 | HC |
| SRR5110460 | panicle | Dawn + 21h | 86.38 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 51.80 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 14.66 | HC |
| SRR1633182 | panicle | WT | 44.14 | HC |
| SRR1633185 | panicle | WT | 60.64 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 119.87 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 124.97 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 114.57 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 145.98 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 105.18 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 99.76 | HC |
| SRR5126147 | root | "mock,1_day" | 57.77 | HC |
| SRR5126148 | root | "mock,1_day" | 45.82 | HC |
| SRR5126149 | root | "mock,1_day" | 72.85 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 60.17 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 71.02 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 58.39 | HC |
| SRR5126153 | root | "mock,7_days" | 55.35 | HC |
| SRR5126155 | root | "mock,7_days" | 50.41 | HC |
| SRR5126157 | root | "mock,7_days" | 39.55 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 40.05 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 42.57 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 52.40 | HC |
| SRR5126165 | root | "mock,14_days" | 42.07 | HC |
| SRR5126167 | root | "mock,14_days" | 89.17 | HC |
| SRR5126169 | root | "mock,14_days" | 54.12 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 40.77 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 31.75 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 26.52 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 60.98 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 49.26 | HC |
| SRR1213694 | root | wt | 56.68 | HC |
| SRR1213695 | root | wt | 204.75 | HC |
| SRR4947478 | root | control | 73.73 | HC |
| SRR4947479 | root | control | 66.11 | HC |
| SRR4947480 | root | control | 77.36 | HC |
| SRR4947481 | root | control | 86.65 | HC |
| SRR4947482 | root | Al | 90.59 | HC |
| SRR4947483 | root | Al | 73.15 | HC |
| SRR4947484 | root | Al | 67.21 | HC |
| SRR4947485 | root | Al | 79.14 | HC |
| SRR4947487 | root | control | 74.78 | HC |
| SRR4947488 | root | control | 71.87 | HC |
| SRR4947489 | root | control | 71.62 | HC |
| SRR4947490 | root | Al | 64.69 | HC |
| SRR4947491 | root | Al | 43.26 | HC |
| SRR4947492 | root | Al | 60.99 | HC |
| SRR4947493 | root | Al | 66.44 | HC |
| SRR4947494 | root | control | 69.41 | HC |
| SRR4947497 | root | control | 60.51 | HC |
| SRR4947498 | root | Al | 46.41 | HC |
| SRR4947499 | root | Al | 46.04 | HC |
| SRR4947500 | root | Al | 63.34 | HC |
| SRR4947501 | root | Al | 54.31 | HC |
| SRR4947502 | root | control | 55.51 | HC |
| SRR4947503 | root | control | 70.56 | HC |
| SRR4947504 | root | control | 73.00 | HC |
| SRR4947505 | root | control | 69.03 | HC |
| SRR4947506 | root | Al | 73.61 | HC |
| SRR4947507 | root | Al | 49.21 | HC |
| SRR4947508 | root | Al | 66.96 | HC |
| SRR4947509 | root | Al | 72.07 | HC |
| SRR6502091 | root | 100 mM NaCl | 81.94 | HC |
| SRR6502092 | root | 100 mM NaCl | 74.28 | HC |
| SRR6502093 | root | 100 mM NaCl | 84.97 | HC |
| SRR6502094 | root | control | 85.65 | HC |
| SRR6502095 | root | control | 84.57 | HC |
| SRR6502096 | root | control | 85.99 | HC |
| SRR6502103 | root | 100 mM NaCl | 85.87 | HC |
| SRR6502104 | root | 100 mM NaCl | 90.75 | HC |
| SRR6502105 | root | 100 mM NaCl | 70.94 | HC |
| SRR6502106 | root | control | 88.72 | HC |
| SRR6502107 | root | control | 97.86 | HC |
| SRR6502108 | root | control | 79.66 | HC |
| SRR1740434 | root_differentiation_zone | wt | 57.86 | HC |
| SRR1740435 | root_differentiation_zone | wt | 57.36 | HC |
| SRR1740436 | root_differentiation_zone | wt | 55.84 | HC |
| SRR1740431 | root_elongation_zone | wt | 49.82 | HC |
| SRR1740432 | root_elongation_zone | wt | 53.12 | HC |
| SRR1740433 | root_elongation_zone | wt | 52.85 | HC |
| SRR1740428 | root_meristematic_zone | wt | 44.39 | HC |
| SRR1740429 | root_meristematic_zone | wt | 37.19 | HC |
| SRR1740430 | root_meristematic_zone | wt | 40.38 | HC |
| SRR6441554 | seedling | wild_type | 100.55 | HC |
| SRR6441555 | seedling | wild_type | 92.33 | HC |
| SRR2154086 | seedling | wt | 127.19 | HC |
| SRR2154082 | seedling | wt | 111.82 | HC |
| SRR2154083 | seedling | wt | 109.78 | HC |
| SRR2154084 | seedling | wt | 106.84 | HC |
| SRR2154085 | seedling | wt | 70.65 | HC |
| SRR2154087 | seedling | wt | 109.84 | HC |
| SRR3098741 | seedling | wt | 57.69 | HC |
| SRR3098742 | seedling | wt | 67.04 | HC |
| SRR3098743 | seedling | wt | 41.44 | HC |
| SRR2857719 | seedling | drought_stress_0h | 98.56 | HC |
| SRR2857720 | seedling | drought_stress_1h | 107.31 | HC |
| SRR2857721 | seedling | drought_stress_6h | 84.11 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 208.97 | HC |
| SRR1944583 | seedling | no_treatment | 90.20 | HC |
| SRR358791 | seedling | wt | 329.67 | HC |
| SRR358792 | seedling | wt | 324.78 | HC |
| SRR358793 | seedling | wt | 165.92 | HC |
| SRR358794 | seedling | wt | 168.54 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 22.92 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 32.12 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 35.34 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 22.29 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 23.08 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 25.36 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 18.47 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 15.09 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 41.00 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 27.28 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 26.72 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 30.76 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 34.34 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 25.26 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 37.87 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 32.07 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 31.84 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 46.94 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 51.14 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 33.18 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 52.88 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 54.93 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 69.02 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 111.74 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 157.33 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 164.73 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 131.84 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 135.01 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 163.86 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 165.90 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 106.06 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 89.31 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 113.44 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 116.54 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 93.27 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 144.37 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 174.54 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 176.57 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 183.39 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 139.10 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 112.76 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 96.04 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 35.57 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 36.95 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 37.13 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 28.46 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 40.13 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 32.98 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 35.76 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 38.61 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 34.48 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 36.36 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 37.39 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 38.05 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 37.10 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 35.82 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 38.51 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 36.67 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 33.53 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 35.82 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 39.06 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 43.70 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 36.31 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 36.36 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 34.38 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 98.57 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 95.02 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 72.32 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 94.25 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 67.46 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 71.87 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 71.49 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 73.99 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 48.71 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 42.29 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 40.12 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 42.55 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 34.01 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 39.92 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 51.90 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 53.25 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 50.96 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 114.98 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 109.21 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 96.14 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 92.66 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 84.53 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 95.37 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 113.41 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 101.48 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 114.60 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 79.72 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 92.53 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 85.48 | HC |