| SRR4457249 | 2nd_leaf | DAH4 | 46.50 | HC |
| SRR4457250 | 2nd_leaf | DAH4 | 24.14 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 28.72 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 18.99 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 20.51 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 14.66 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 12.11 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 15.02 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 10.53 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 8.81 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 6.54 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 8.64 | HC |
| SRR4457261 | 2nd_leaf | DAH36 | 13.60 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 6.09 | HC |
| SRR358795 | callus | wt | 21.42 | HC |
| SRR358796 | callus | wt | 15.44 | HC |
| SRR358797 | callus | wt | 22.72 | HC |
| SRR358798 | callus | wt | 17.38 | HC |
| SRR5560727 | caryopsis | wild_type | 16.37 | HC |
| SRR5560728 | caryopsis | wild_type | 16.91 | HC |
| SRR5560729 | caryopsis | wild_type | 7.68 | HC |
| SRR7265382 | embryo | 3hA | 4.82 | HC |
| SRR7265383 | embryo | 3hA | 5.05 | HC |
| SRR7265384 | embryo | 3hA | 4.42 | HC |
| SRR7265391 | embryo | 12hN | 5.52 | HC |
| SRR7265393 | embryo | 12hN | 5.27 | HC |
| SRR2338868 | endosprem | high_temperature | 3.73 | HC |
| SRR4457231 | flag_leaf | DAH4 | 12.42 | HC |
| SRR4457232 | flag_leaf | DAH4 | 12.75 | HC |
| SRR4457233 | flag_leaf | DAH4 | 9.93 | HC |
| SRR4457234 | flag_leaf | DAH12 | 4.68 | HC |
| SRR4457235 | flag_leaf | DAH12 | 7.20 | HC |
| SRR4457236 | flag_leaf | DAH12 | 3.73 | HC |
| SRR4457243 | flag_leaf | DAH36 | 10.70 | HC |
| SRR8060835 | leaf | wild_type | 7.24 | HC |
| SRR8060836 | leaf | wild_type | 10.72 | HC |
| SRR8060837 | leaf | wild_type | 6.71 | HC |
| SRR8240825 | leaf | wild_type | 5.15 | HC |
| SRR8240826 | leaf | wild_type | 2.46 | HC |
| SRR8240819 | leaf | wild_type | 3.03 | HC |
| SRR8240820 | leaf | wild_type | 3.50 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.50 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 12.81 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 13.18 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 29.18 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.62 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 11.38 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 12.04 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.68 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 35.34 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 14.34 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 17.68 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.02 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 20.61 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 12.52 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 14.21 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 11.89 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 10.47 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 10.92 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 7.62 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 6.21 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 11.95 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 22.94 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 8.24 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 10.56 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 23.26 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.09 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 28.80 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 11.42 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 13.39 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.93 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 11.10 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 6.88 | HC |
| SRR504365 | leaf | wt | 51.01 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 13.92 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 9.81 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 7.39 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 8.96 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 32.12 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 33.20 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 33.12 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 4.92 | HC |
| SRR1213692 | leaf | wt | 5.74 | HC |
| SRR1213693 | leaf | wt | 10.53 | HC |
| SRR5856927 | leaf | control | 4.61 | HC |
| SRR5856928 | leaf | control | 3.73 | HC |
| SRR5856929 | leaf | control | 5.15 | HC |
| SRR5856930 | leaf | salt | 9.62 | HC |
| SRR5856931 | leaf | salt | 11.44 | HC |
| SRR5856932 | leaf | salt | 9.01 | HC |
| SRR5856933 | leaf | control | 3.93 | HC |
| SRR5856934 | leaf | control | 3.32 | HC |
| SRR5856935 | leaf | control | 7.03 | HC |
| SRR5856936 | leaf | salt | 9.84 | HC |
| SRR5856937 | leaf | salt | 14.04 | HC |
| SRR5856938 | leaf | salt | 11.52 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 36.09 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 32.83 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 45.00 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 21.30 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 31.90 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 27.22 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 29.37 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 33.29 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 38.74 | HC |
| SRR6168973 | leaf | none (control) | 102.56 | HC |
| SRR6168974 | leaf | none (control) | 105.96 | HC |
| SRR6168975 | leaf | none (control) | 153.40 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 50.30 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 147.04 | HC |
| SRR6168979 | leaf | none (control) | 4.47 | HC |
| SRR6168980 | leaf | none (control) | 8.95 | HC |
| SRR6168981 | leaf | none (control) | 43.97 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 20.79 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 45.67 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 50.06 | HC |
| SRR8582888 | panicle | AM | 24.24 | HC |
| SRR8582889 | panicle | AM | 8.36 | HC |
| SRR8582890 | panicle | AM | 15.80 | HC |
| SRR8582891 | panicle | PM | 204.82 | HC |
| SRR8582892 | panicle | PM | 345.65 | HC |
| SRR8582893 | panicle | PM | 239.26 | HC |
| SRR5110429 | panicle | Dawn | 5.38 | HC |
| SRR5110430 | panicle | Dawn | 15.74 | HC |
| SRR5110431 | panicle | Dawn | 5.13 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.16 | HC |
| SRR1633182 | panicle | WT | 19.04 | HC |
| SRR1633185 | panicle | WT | 22.62 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 11.96 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 11.70 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 4.46 | HC |
| SRR5126155 | root | "mock,7_days" | 4.73 | HC |
| SRR5126157 | root | "mock,7_days" | 20.55 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 15.20 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 17.90 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 5.52 | HC |
| SRR5126169 | root | "mock,14_days" | 4.63 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 11.35 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 11.49 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 16.14 | HC |
| SRR1213695 | root | wt | 10.33 | HC |
| SRR4947481 | root | control | 10.69 | HC |
| SRR4947485 | root | Al | 6.74 | HC |
| SRR4947488 | root | control | 5.28 | HC |
| SRR4947489 | root | control | 6.11 | HC |
| SRR4947501 | root | Al | 7.17 | HC |
| SRR6502093 | root | 100 mM NaCl | 5.88 | HC |
| SRR6502094 | root | control | 5.48 | HC |
| SRR6502107 | root | control | 4.34 | HC |
| SRR2154086 | seedling | wt | 44.19 | HC |
| SRR2154085 | seedling | wt | 25.04 | HC |
| SRR2154087 | seedling | wt | 22.05 | HC |
| SRR3098741 | seedling | wt | 39.58 | HC |
| SRR3098742 | seedling | wt | 34.77 | HC |
| SRR3098743 | seedling | wt | 62.31 | HC |
| SRR2857719 | seedling | drought_stress_0h | 8.37 | HC |
| SRR2857720 | seedling | drought_stress_1h | 5.76 | HC |
| SRR2857721 | seedling | drought_stress_6h | 13.27 | HC |
| SRR358791 | seedling | wt | 26.71 | HC |
| SRR358792 | seedling | wt | 27.85 | HC |
| SRR358793 | seedling | wt | 13.70 | HC |
| SRR358794 | seedling | wt | 12.26 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 15.89 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 18.12 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 16.62 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 18.00 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 22.18 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 22.11 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 27.27 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 17.23 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 13.81 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 26.94 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 30.79 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 5.66 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 5.76 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.97 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 9.34 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 4.45 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.67 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 16.34 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 27.36 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 44.29 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 13.29 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 5.79 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 4.39 | HC |