| SRR6320473 | carpel | wt | 17.70 | HC |
| SRR6320498 | carpel | wt | 17.00 | HC |
| SRR5560727 | caryopsis | wild_type | 27.25 | HC |
| SRR5560728 | caryopsis | wild_type | 21.73 | HC |
| SRR5560729 | caryopsis | wild_type | 12.86 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 9.56 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 6.90 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 6.03 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 9.24 | HC |
| SRR7265378 | embryo | 1hA | 3.64 | HC |
| SRR7265379 | embryo | 1hN | 3.66 | HC |
| SRR7265381 | embryo | 1hN | 3.52 | HC |
| SRR7265387 | embryo | 3hN | 3.30 | HC |
| SRR2338867 | endosprem | control | 4.20 | HC |
| SRR2338868 | endosprem | high_temperature | 3.27 | HC |
| SRR2338869 | endosprem | high_temperature | 3.73 | HC |
| SRR976168 | flag_leaf | wild_type | 4.61 | HC |
| SRR1213690 | flower | wt(flower buds) | 15.22 | HC |
| SRR1213691 | flower | wt | 10.39 | HC |
| SRR8060835 | leaf | wild_type | 16.70 | HC |
| SRR8060836 | leaf | wild_type | 5.18 | HC |
| SRR8060837 | leaf | wild_type | 7.29 | HC |
| SRR8240825 | leaf | wild_type | 2.89 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 11.44 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 6.27 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 7.70 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 12.10 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 14.64 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 15.43 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 13.91 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 11.05 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 27.32 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 10.72 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 12.36 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 24.69 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.75 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.40 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 16.66 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 13.86 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 21.18 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 28.80 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 9.82 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 19.46 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 13.66 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.61 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 7.04 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 12.05 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 21.97 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 11.72 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 13.66 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 9.27 | HC |
| SRR1952800 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 10.24 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 8.22 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 16.94 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 8.87 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 21.64 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 11.72 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 20.83 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 16.57 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 7.12 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 17.19 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 19.73 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.82 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 17.19 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 19.73 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.82 | HC |
| SRR1761528 | leaf | drought | 17.19 | HC |
| SRR1761529 | leaf | drought | 19.73 | HC |
| SRR1761531 | leaf | control | 5.82 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 8.75 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 8.81 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 11.79 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 16.68 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 9.95 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 12.06 | HC |
| SRR8611900 | leaf | Non-inoculated | 13.93 | HC |
| SRR8611901 | leaf | Non-inoculated | 11.07 | HC |
| SRR8611902 | leaf | Non-inoculated | 9.30 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 13.66 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 18.29 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 17.25 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 21.80 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 21.47 | HC |
| SRR1213692 | leaf | wt | 52.63 | HC |
| SRR1213693 | leaf | wt | 19.65 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 10.69 | HC |
| SRR5856930 | leaf | salt | 2.70 | HC |
| SRR5856931 | leaf | salt | 2.60 | HC |
| SRR5856937 | leaf | salt | 2.38 | HC |
| SRR5856938 | leaf | salt | 2.11 | HC |
| SRR6053392 | leaf | ethanol solvent (untreated control) | 8.24 | HC |
| SRR6053393 | leaf | ethanol solvent (untreated control) | 13.47 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 16.51 | HC |
| SRR6053395 | leaf | gibberellic acid (GA) | 19.80 | HC |
| SRR6053396 | leaf | gibberellic acid (GA) | 10.56 | HC |
| SRR6053397 | leaf | gibberellic acid (GA) | 18.40 | HC |
| SRR6053398 | leaf | Paclobutrazol (PB) | 13.50 | HC |
| SRR6053399 | leaf | Paclobutrazol (PB) | 14.29 | HC |
| SRR6053400 | leaf | Paclobutrazol (PB) | 11.99 | HC |
| SRR6168973 | leaf | none (control) | 9.12 | HC |
| SRR6168974 | leaf | none (control) | 9.52 | HC |
| SRR6168975 | leaf | none (control) | 11.43 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 13.35 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 12.09 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 8.33 | HC |
| SRR6168979 | leaf | none (control) | 11.15 | HC |
| SRR6168980 | leaf | none (control) | 12.74 | HC |
| SRR6168981 | leaf | none (control) | 29.06 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 30.42 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 28.94 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 32.39 | HC |
| SRR8582888 | panicle | AM | 5.97 | HC |
| SRR8582891 | panicle | PM | 22.35 | HC |
| SRR8582892 | panicle | PM | 14.03 | HC |
| SRR5110435 | panicle | Dawn + 3.5h | 3.50 | HC |
| SRR5110437 | panicle | Dawn + 7h | 12.28 | HC |
| SRR5110438 | panicle | Dawn + 7h | 7.44 | HC |
| SRR5110440 | panicle | Dawn + 7h | 5.78 | HC |
| SRR5110441 | panicle | Dawn + 10.5h | 8.56 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 6.38 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 9.46 | HC |
| SRR5110444 | panicle | Dawn + 10.5h | 10.68 | HC |
| SRR5110445 | panicle | Dusk | 12.49 | HC |
| SRR5110446 | panicle | Dusk | 7.86 | HC |
| SRR5110447 | panicle | Dusk | 12.69 | HC |
| SRR5110448 | panicle | Dusk | 9.85 | HC |
| SRR5110451 | panicle | Dawn + 14h | 7.89 | HC |
| SRR5110452 | panicle | Dawn + 14h | 6.70 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 4.36 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.98 | HC |
| SRR5110455 | panicle | Dawn + 17.5h | 4.67 | HC |
| SRR5110457 | panicle | Dawn + 21h | 3.96 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 6.19 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 3.79 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 25.92 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 12.19 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 25.90 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 26.83 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 12.63 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 14.20 | HC |
| SRR5126149 | root | "mock,1_day" | 5.18 | HC |
| SRR5126157 | root | "mock,7_days" | 7.96 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 6.53 | HC |
| SRR5126167 | root | "mock,14_days" | 4.08 | HC |
| SRR5126169 | root | "mock,14_days" | 5.36 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 5.18 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 7.22 | HC |
| SRR1213694 | root | wt | 4.00 | HC |
| SRR1213695 | root | wt | 6.15 | HC |
| SRR4947480 | root | control | 5.64 | HC |
| SRR4947481 | root | control | 6.22 | HC |
| SRR4947482 | root | Al | 3.79 | HC |
| SRR4947484 | root | Al | 5.07 | HC |
| SRR4947488 | root | control | 5.49 | HC |
| SRR4947489 | root | control | 4.99 | HC |
| SRR4947506 | root | Al | 4.26 | HC |
| SRR6502105 | root | 100 mM NaCl | 5.35 | HC |
| SRR6441554 | seedling | wild_type | 7.51 | HC |
| SRR6441555 | seedling | wild_type | 11.59 | HC |
| SRR2154086 | seedling | wt | 6.06 | HC |
| SRR2154082 | seedling | wt | 10.26 | HC |
| SRR2154083 | seedling | wt | 9.81 | HC |
| SRR2154084 | seedling | wt | 10.86 | HC |
| SRR2154085 | seedling | wt | 7.20 | HC |
| SRR2154087 | seedling | wt | 9.99 | HC |
| SRR3098742 | seedling | wt | 4.21 | HC |
| SRR3098743 | seedling | wt | 2.73 | HC |
| SRR2857720 | seedling | drought_stress_1h | 5.51 | HC |
| SRR2857721 | seedling | drought_stress_6h | 11.89 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 7.56 | HC |
| SRR1944583 | seedling | no_treatment | 5.07 | HC |
| SRR358791 | seedling | wt | 27.36 | HC |
| SRR358792 | seedling | wt | 54.41 | HC |
| SRR358793 | seedling | wt | 40.40 | HC |
| SRR358794 | seedling | wt | 35.93 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 11.08 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 9.37 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 9.99 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 10.84 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.08 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 10.10 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.68 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 10.99 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.45 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 6.72 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 10.04 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 17.34 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 4.86 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 16.65 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 19.90 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 10.59 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 20.48 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 22.45 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 8.38 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 12.64 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 20.12 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 8.89 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 10.56 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 20.36 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 23.35 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 10.66 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 13.95 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 14.43 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 14.31 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.17 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.91 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 18.70 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 15.47 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 8.88 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 12.69 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 7.08 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 12.93 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 13.62 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 7.44 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 11.98 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 12.56 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.99 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 4.44 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 4.70 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 5.75 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 6.30 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 6.05 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 5.82 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 6.75 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 5.35 | HC |
| SRR7760291 | spikelet | control condition (29C) for 7 hrs | 8.25 | HC |
| SRR7760292 | spikelet | control condition (29C) for 7 hrs | 7.34 | HC |
| SRR7760293 | spikelet | control condition (29C) for 7 hrs | 17.70 | HC |
| SRR7760294 | spikelet | high temperature treatment (38C) for 7 hrs | 15.63 | HC |
| SRR7760295 | spikelet | high temperature treatment (38C) for 7 hrs | 11.43 | HC |
| SRR7760296 | spikelet | high temperature treatment (38C) for 7 hrs | 8.68 | HC |
| SRR7760297 | spikelet | control condition (29C) for 7 hrs | 6.39 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 16.03 | HC |
| SRR7760299 | spikelet | control condition (29C) for 7 hrs | 17.38 | HC |
| SRR7760300 | spikelet | high temperature treatment (38C) for 7 hrs | 12.08 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 17.45 | HC |
| SRR7760302 | spikelet | high temperature treatment (38C) for 7 hrs | 4.30 | HC |