| SRR4457250 | 2nd_leaf | DAH4 | 4.90 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 5.38 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 5.01 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 8.59 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 8.12 | HC |
| SRR358795 | callus | wt | 16.98 | HC |
| SRR358797 | callus | wt | 16.15 | HC |
| SRR358798 | callus | wt | 15.77 | HC |
| SRR6320473 | carpel | wt | 10.69 | HC |
| SRR5560727 | caryopsis | wild_type | 9.23 | HC |
| SRR5560728 | caryopsis | wild_type | 9.89 | HC |
| SRR7265401 | coleoptile | 2dA | 3.64 | HC |
| SRR7265406 | coleoptile | 3dA | 4.10 | HC |
| SRR7265412 | coleoptile | 4dA | 3.81 | HC |
| SRR7265414 | coleoptile | 4dA | 5.35 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 6.86 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 5.31 | HC |
| SRR4104638 | crown | "Zn_deficiency,8_days_of_treatment" | 7.79 | HC |
| SRR4104640 | crown | "Zn_deficiency,8_days_of_treatment" | 25.97 | HC |
| SRR4104641 | crown | "Zn_deficiency,8_days_of_treatment" | 11.78 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 10.04 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 9.29 | HC |
| SRR7265373 | embryo | dry seed 0 h | 7.55 | HC |
| SRR7265376 | embryo | 1hA | 6.90 | HC |
| SRR7265377 | embryo | 1hA | 6.61 | HC |
| SRR7265378 | embryo | 1hA | 8.69 | HC |
| SRR7265379 | embryo | 1hN | 4.36 | HC |
| SRR7265380 | embryo | 1hN | 4.64 | HC |
| SRR7265381 | embryo | 1hN | 9.56 | HC |
| SRR7265382 | embryo | 3hA | 11.46 | HC |
| SRR7265383 | embryo | 3hA | 11.11 | HC |
| SRR7265384 | embryo | 3hA | 13.55 | HC |
| SRR7265385 | embryo | 3hN | 12.84 | HC |
| SRR7265386 | embryo | 3hN | 7.01 | HC |
| SRR7265387 | embryo | 3hN | 9.97 | HC |
| SRR7265388 | embryo | 12hA | 5.31 | HC |
| SRR7265390 | embryo | 12hA | 5.08 | HC |
| SRR4457232 | flag_leaf | DAH4 | 6.53 | HC |
| SRR4457241 | flag_leaf | DAH28 | 4.94 | HC |
| SRR4457245 | flag_leaf | DAH36 | 3.97 | HC |
| SRR4457246 | flag_leaf | DAH44 | 7.09 | HC |
| SRR8060835 | leaf | wild_type | 12.80 | HC |
| SRR8060837 | leaf | wild_type | 13.96 | HC |
| SRR8240825 | leaf | wild_type | 3.71 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.02 | HC |
| SRR504365 | leaf | wt | 7.46 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 7.04 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 14.08 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 7.06 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 4.14 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 11.07 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 14.28 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 11.71 | HC |
| SRR8611902 | leaf | Non-inoculated | 6.94 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 36.11 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 18.67 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 8.42 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 5.06 | HC |
| SRR1213692 | leaf | wt | 6.33 | HC |
| SRR1213693 | leaf | wt | 6.58 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 7.69 | HC |
| SRR5856928 | leaf | control | 5.04 | HC |
| SRR5856931 | leaf | salt | 2.32 | HC |
| SRR5856932 | leaf | salt | 2.11 | HC |
| SRR5856933 | leaf | control | 13.86 | HC |
| SRR5856934 | leaf | control | 3.19 | HC |
| SRR5856936 | leaf | salt | 2.79 | HC |
| SRR6053394 | leaf | ethanol solvent (untreated control) | 13.07 | HC |
| SRR6168973 | leaf | none (control) | 16.19 | HC |
| SRR6168974 | leaf | none (control) | 11.78 | HC |
| SRR6168975 | leaf | none (control) | 39.71 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 9.51 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 3.12 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 18.06 | HC |
| SRR6168979 | leaf | none (control) | 12.67 | HC |
| SRR6168980 | leaf | none (control) | 18.80 | HC |
| SRR6168981 | leaf | none (control) | 4.60 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 9.46 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 21.77 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 13.51 | HC |
| SRR8582889 | panicle | AM | 2.25 | HC |
| SRR8582893 | panicle | PM | 9.61 | HC |
| SRR5110431 | panicle | Dawn | 4.45 | HC |
| SRR5110445 | panicle | Dusk | 6.08 | HC |
| SRR5110446 | panicle | Dusk | 7.38 | HC |
| SRR5110447 | panicle | Dusk | 7.68 | HC |
| SRR5110449 | panicle | Dawn + 14h | 8.60 | HC |
| SRR5110452 | panicle | Dawn + 14h | 9.93 | HC |
| SRR5110453 | panicle | Dawn + 17.5h | 6.82 | HC |
| SRR5110454 | panicle | Dawn + 17.5h | 3.80 | HC |
| SRR5110456 | panicle | Dawn + 17.5h | 5.74 | HC |
| SRR5110459 | panicle | Dawn + 21h | 5.90 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 2.27 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 4.67 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 7.54 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 11.65 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 6.71 | HC |
| SRR5126167 | root | "mock,14_days" | 10.81 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 11.47 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 19.73 | HC |
| SRR1213694 | root | wt | 34.88 | HC |
| SRR1213695 | root | wt | 7.51 | HC |
| SRR4947482 | root | Al | 6.99 | HC |
| SRR4947506 | root | Al | 4.33 | HC |
| SRR6502092 | root | 100 mM NaCl | 6.45 | HC |
| SRR6502096 | root | control | 7.96 | HC |
| SRR6502105 | root | 100 mM NaCl | 4.90 | HC |
| SRR1740428 | root_meristematic_zone | wt | 5.92 | HC |
| SRR2154083 | seedling | wt | 5.48 | HC |
| SRR2154084 | seedling | wt | 4.40 | HC |
| SRR2857721 | seedling | drought_stress_6h | 5.42 | HC |
| SRR358793 | seedling | wt | 10.89 | HC |
| SRR358794 | seedling | wt | 12.83 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 7.54 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 6.29 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.15 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.02 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 7.00 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 29.82 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 35.24 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 31.94 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 22.92 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 27.51 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 27.09 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 21.14 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 21.36 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 23.31 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 15.53 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 22.32 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 20.98 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 7.17 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.82 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.66 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.19 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 5.14 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 7.31 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.96 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.50 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 10.33 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 12.01 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 12.29 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 9.52 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 10.52 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 14.42 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 22.49 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 22.91 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 6.94 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 4.55 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 9.81 | HC |
| SRR7760298 | spikelet | control condition (29C) for 7 hrs | 8.19 | HC |
| SRR7760301 | spikelet | high temperature treatment (38C) for 7 hrs | 3.02 | HC |