| SRR358796 | callus | wt | 10.68 | HC |
| SRR358798 | callus | wt | 10.46 | HC |
| SRR5560727 | caryopsis | wild_type | 9.10 | HC |
| SRR5560728 | caryopsis | wild_type | 7.33 | HC |
| SRR5560729 | caryopsis | wild_type | 9.52 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 10.05 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 10.97 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 7.48 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 6.85 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 13.53 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 22.70 | HC |
| SRR2338867 | endosprem | control | 2.34 | HC |
| SRR2338868 | endosprem | high_temperature | 6.73 | HC |
| SRR2338869 | endosprem | high_temperature | 5.80 | HC |
| SRR976168 | flag_leaf | wild_type | 5.60 | HC |
| SRR1213690 | flower | wt(flower buds) | 7.41 | HC |
| SRR1213691 | flower | wt | 9.09 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 13.86 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 7.81 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 13.24 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 10.91 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.55 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 9.11 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.63 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 9.49 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.68 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.23 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 8.96 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 6.61 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.62 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.58 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 5.86 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 10.71 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 6.97 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.29 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 5.26 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 5.95 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.13 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.08 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.95 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 7.60 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 13.27 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 10.82 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 5.91 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 13.27 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 10.82 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 5.91 | HC |
| SRR1761528 | leaf | drought | 13.27 | HC |
| SRR1761529 | leaf | drought | 10.82 | HC |
| SRR1761531 | leaf | control | 5.91 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.93 | HC |
| SRR6417965 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.42 | HC |
| SRR6417966 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 9.19 | HC |
| SRR6417967 | leaf | H2O_control | 5.09 | HC |
| SRR6417968 | leaf | H2O_control | 4.79 | HC |
| SRR6417969 | leaf | H2O_control | 6.13 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 4.40 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 4.04 | HC |
| SRR8611900 | leaf | Non-inoculated | 5.56 | HC |
| SRR8611901 | leaf | Non-inoculated | 3.80 | HC |
| SRR8611902 | leaf | Non-inoculated | 6.59 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 12.64 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 13.73 | HC |
| SRR1213692 | leaf | wt | 6.10 | HC |
| SRR1213693 | leaf | wt | 6.83 | HC |
| SRR6168973 | leaf | none (control) | 6.69 | HC |
| SRR6168974 | leaf | none (control) | 7.89 | HC |
| SRR6168980 | leaf | none (control) | 5.93 | HC |
| SRR6168981 | leaf | none (control) | 8.85 | HC |
| SRR8582889 | panicle | AM | 1.84 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 7.72 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 4.27 | HC |
| SRR5126147 | root | "mock,1_day" | 14.25 | HC |
| SRR5126148 | root | "mock,1_day" | 15.54 | HC |
| SRR5126149 | root | "mock,1_day" | 11.46 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 7.61 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 6.55 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 12.49 | HC |
| SRR5126153 | root | "mock,7_days" | 5.59 | HC |
| SRR5126155 | root | "mock,7_days" | 7.08 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 7.45 | HC |
| SRR5126169 | root | "mock,14_days" | 7.02 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.38 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 5.10 | HC |
| SRR1213695 | root | wt | 5.97 | HC |
| SRR1740434 | root_differentiation_zone | wt | 3.86 | HC |
| SRR1740435 | root_differentiation_zone | wt | 5.31 | HC |
| SRR1740436 | root_differentiation_zone | wt | 4.15 | HC |
| SRR1740431 | root_elongation_zone | wt | 19.08 | HC |
| SRR1740432 | root_elongation_zone | wt | 16.94 | HC |
| SRR1740433 | root_elongation_zone | wt | 18.52 | HC |
| SRR1740428 | root_meristematic_zone | wt | 24.21 | HC |
| SRR1740429 | root_meristematic_zone | wt | 13.52 | HC |
| SRR1740430 | root_meristematic_zone | wt | 17.95 | HC |
| SRR6441554 | seedling | wild_type | 4.73 | HC |
| SRR6441555 | seedling | wild_type | 4.08 | HC |
| SRR2154086 | seedling | wt | 10.13 | HC |
| SRR2154087 | seedling | wt | 10.25 | HC |
| SRR2857721 | seedling | drought_stress_6h | 5.12 | HC |
| SRR358794 | seedling | wt | 6.82 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 6.44 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 11.23 | HC |
| SRR1288368 | shoot | "roots_rot_nematode_(H._oryzae),3_days_post_infection" | 20.47 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 14.95 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.20 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 7.74 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 5.76 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 6.51 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 5.35 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 6.19 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 6.24 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 6.02 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 3.95 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 4.77 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 5.70 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 4.69 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 5.85 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 3.79 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 5.39 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.26 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.00 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 7.87 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.54 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.88 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.35 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.33 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.74 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.69 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.09 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 40.17 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 39.40 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 37.67 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 45.99 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 27.95 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 39.23 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 55.28 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 52.40 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 52.14 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 53.62 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 47.47 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 47.00 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 46.53 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 42.56 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 40.93 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 46.76 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 54.60 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 50.80 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 49.10 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 40.67 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 53.77 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 35.25 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 35.30 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 7.87 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 7.90 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 9.00 | HC |