| SRR5560727 | caryopsis | wild_type | 70.79 | HC |
| SRR5560728 | caryopsis | wild_type | 38.36 | HC |
| SRR5560729 | caryopsis | wild_type | 34.82 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 7.95 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 7.76 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 8.36 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 5.31 | HC |
| SRR4457232 | flag_leaf | DAH4 | 3.99 | HC |
| SRR1213690 | flower | wt(flower buds) | 5.97 | HC |
| SRR1213691 | flower | wt | 5.66 | HC |
| SRR8240824 | leaf | wild_type | 20.81 | HC |
| SRR8240825 | leaf | wild_type | 15.19 | HC |
| SRR8240826 | leaf | wild_type | 26.57 | HC |
| SRR8240818 | leaf | wild_type | 12.92 | HC |
| SRR8240819 | leaf | wild_type | 31.07 | HC |
| SRR8240820 | leaf | wild_type | 29.46 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 22.73 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 10.30 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 12.50 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 14.18 | HC |
| SRR2922622 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 11.35 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 14.95 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 12.24 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 7.01 | HC |
| SRR1952780 | leaf | 48_hrs_after_inoculation_with_BLS256 | 9.72 | HC |
| SRR1952781 | leaf | 48_hrs_after_inoculation_with_BLS279 | 11.29 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 13.67 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 11.17 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 12.97 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 16.46 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 10.27 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 9.70 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 11.34 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 9.37 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 17.97 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 9.88 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 12.43 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 12.93 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 15.19 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 20.33 | HC |
| SRR1952796 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 13.35 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 9.79 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 12.85 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 11.79 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 12.56 | HC |
| SRR1952802 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 9.82 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.36 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.16 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 13.29 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 8.59 | HC |
| SRR1952807 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 10.92 | HC |
| SRR1952808 | leaf | 48_hrs_after_mock_inoculation | 14.39 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 19.19 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 19.25 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 9.38 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 10.91 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 16.20 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 11.33 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 9.38 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 10.91 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 16.20 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 11.33 | HC |
| SRR1761528 | leaf | drought | 9.38 | HC |
| SRR1761529 | leaf | drought | 10.91 | HC |
| SRR1761530 | leaf | control | 16.20 | HC |
| SRR1761531 | leaf | control | 11.33 | HC |
| SRR504365 | leaf | wt | 12.52 | HC |
| SRR6417968 | leaf | H2O_control | 3.86 | HC |
| SRR6417969 | leaf | H2O_control | 6.38 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 4.34 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 5.44 | HC |
| SRR3209771 | leaf | Drought;Long_Day | 8.03 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 13.00 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 7.00 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 8.36 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 18.42 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 11.27 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 7.17 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 10.43 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 6.07 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 17.38 | HC |
| SRR8611900 | leaf | Non-inoculated | 95.50 | HC |
| SRR8611901 | leaf | Non-inoculated | 135.21 | HC |
| SRR8611902 | leaf | Non-inoculated | 129.31 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 85.20 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 104.54 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 108.98 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 16.35 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 13.82 | HC |
| SRR1213692 | leaf | wt | 15.11 | HC |
| SRR1213693 | leaf | wt | 17.51 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 20.94 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 23.48 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 30.03 | HC |
| SRR6502088 | leaf | control | 12.21 | HC |
| SRR6502089 | leaf | control | 12.89 | HC |
| SRR6502090 | leaf | control | 23.91 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 16.22 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 16.02 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 33.89 | HC |
| SRR6502100 | leaf | control | 12.83 | HC |
| SRR6502101 | leaf | control | 16.95 | HC |
| SRR6502102 | leaf | control | 12.58 | HC |
| SRR6168973 | leaf | none (control) | 93.66 | HC |
| SRR6168974 | leaf | none (control) | 69.74 | HC |
| SRR6168975 | leaf | none (control) | 136.89 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 88.73 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 6.19 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 71.87 | HC |
| SRR6168979 | leaf | none (control) | 9.54 | HC |
| SRR6168980 | leaf | none (control) | 7.63 | HC |
| SRR6168981 | leaf | none (control) | 27.59 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 5.96 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 31.65 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 19.13 | HC |
| SRR8582888 | panicle | AM | 30.28 | HC |
| SRR8582889 | panicle | AM | 62.48 | HC |
| SRR8582890 | panicle | AM | 14.65 | HC |
| SRR8582891 | panicle | PM | 60.65 | HC |
| SRR8582892 | panicle | PM | 30.01 | HC |
| SRR8582893 | panicle | PM | 66.72 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 6.38 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 6.01 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 25.19 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 23.06 | HC |
| SRR1213695 | root | wt | 12.12 | HC |
| SRR6441554 | seedling | wild_type | 41.16 | HC |
| SRR6441555 | seedling | wild_type | 57.16 | HC |
| SRR2154086 | seedling | wt | 16.36 | HC |
| SRR2154085 | seedling | wt | 12.51 | HC |
| SRR2154087 | seedling | wt | 12.22 | HC |
| SRR3098741 | seedling | wt | 15.05 | HC |
| SRR3098742 | seedling | wt | 15.82 | HC |
| SRR3098743 | seedling | wt | 21.97 | HC |
| SRR2857719 | seedling | drought_stress_0h | 5.29 | HC |
| SRR1944582 | seedling | "with_chilling_teatment_(4C,33h)" | 18.59 | HC |
| SRR1944583 | seedling | no_treatment | 19.04 | HC |
| SRR358791 | seedling | wt | 14.27 | HC |
| SRR358792 | seedling | wt | 19.24 | HC |
| SRR358793 | seedling | wt | 25.34 | HC |
| SRR358794 | seedling | wt | 41.47 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 15.76 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 13.61 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 12.39 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 15.44 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 20.05 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.42 | HC |
| SRR4841740 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 11.57 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 6.25 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 15.05 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 18.46 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 12.25 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 14.31 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 14.16 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 13.81 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 25.58 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 44.14 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 53.93 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 66.77 | HC |
| SRR3950252 | shoot | Drought_during_3_days;_mock_inoculated | 69.30 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 34.14 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 53.47 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 47.72 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 9.62 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 7.54 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.43 | HC |
| SRR5796943 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 7.79 | HC |
| SRR5796944 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 20.45 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 10.66 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 10.19 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 11.67 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 15.87 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 16.97 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 6.32 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 6.17 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 6.97 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.14 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 8.93 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 10.48 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 9.01 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 11.69 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 26.10 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 18.02 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 11.54 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 7.97 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 9.27 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 35.55 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 28.45 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 44.36 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 11.88 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 13.94 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 13.57 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 6.48 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 5.96 | HC |