| SRR358795 | callus | wt | 24.53 | HC |
| SRR358796 | callus | wt | 23.94 | HC |
| SRR358797 | callus | wt | 25.37 | HC |
| SRR358798 | callus | wt | 24.69 | HC |
| SRR5560727 | caryopsis | wild_type | 6.98 | HC |
| SRR5560728 | caryopsis | wild_type | 5.68 | HC |
| SRR5560729 | caryopsis | wild_type | 6.54 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 15.27 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 14.80 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 13.26 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 18.77 | HC |
| SRR7265400 | coleoptile | 2dA | 7.17 | HC |
| SRR7265401 | coleoptile | 2dA | 6.07 | HC |
| SRR7265402 | coleoptile | 2dA | 6.22 | HC |
| SRR7265403 | coleoptile | 2dN | 5.97 | HC |
| SRR7265404 | coleoptile | 2dN | 6.23 | HC |
| SRR7265405 | coleoptile | 2dN | 5.19 | HC |
| SRR7265406 | coleoptile | 3dA | 4.41 | HC |
| SRR7265407 | coleoptile | 3dA | 4.09 | HC |
| SRR7265408 | coleoptile | 3dA | 3.40 | HC |
| SRR7265410 | coleoptile | 3dN | 4.48 | HC |
| SRR7265417 | coleoptile | 4dN | 4.51 | HC |
| SRR7265420 | coleoptile | 3dN1dA | 5.18 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 11.97 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 17.42 | HC |
| SRR7265388 | embryo | 12hA | 9.39 | HC |
| SRR7265389 | embryo | 12hA | 8.69 | HC |
| SRR7265390 | embryo | 12hA | 8.55 | HC |
| SRR7265392 | embryo | 12hN | 8.60 | HC |
| SRR7265393 | embryo | 12hN | 9.75 | HC |
| SRR7265394 | embryo | 24hA | 8.96 | HC |
| SRR7265395 | embryo | 24hA | 8.39 | HC |
| SRR7265396 | embryo | 24hA | 7.10 | HC |
| SRR7265397 | embryo | 24hN | 6.45 | HC |
| SRR7265398 | embryo | 24hN | 7.25 | HC |
| SRR7265399 | embryo | 24hN | 9.22 | HC |
| SRR2338866 | endosprem | control | 6.27 | HC |
| SRR2338869 | endosprem | high_temperature | 3.70 | HC |
| SRR1213690 | flower | wt(flower buds) | 10.18 | HC |
| SRR1213691 | flower | wt | 13.00 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 20.75 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 15.70 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 16.93 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 17.93 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 5.83 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 28.36 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 22.59 | HC |
| SRR8582888 | panicle | AM | 5.67 | HC |
| SRR8582889 | panicle | AM | 5.65 | HC |
| SRR8582890 | panicle | AM | 3.52 | HC |
| SRR8582891 | panicle | PM | 9.13 | HC |
| SRR8582892 | panicle | PM | 12.21 | HC |
| SRR8582893 | panicle | PM | 9.55 | HC |
| SRR4947496 | root | control | 18.59 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 4.74 | HC |
| SRR1633182 | panicle | WT | 167.96 | HC |
| SRR1633185 | panicle | WT | 139.75 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 8.64 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 10.23 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 13.58 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 15.02 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 25.70 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 29.13 | HC |
| SRR5126147 | root | "mock,1_day" | 10.56 | HC |
| SRR5126148 | root | "mock,1_day" | 11.28 | HC |
| SRR5126149 | root | "mock,1_day" | 10.59 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 6.77 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 6.07 | HC |
| SRR5126153 | root | "mock,7_days" | 11.17 | HC |
| SRR5126155 | root | "mock,7_days" | 11.77 | HC |
| SRR5126157 | root | "mock,7_days" | 14.02 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 10.70 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 9.97 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 15.93 | HC |
| SRR5126165 | root | "mock,14_days" | 8.35 | HC |
| SRR5126167 | root | "mock,14_days" | 9.65 | HC |
| SRR5126169 | root | "mock,14_days" | 13.64 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 13.45 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 10.25 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 12.05 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 6.85 | HC |
| SRR1213694 | root | wt | 15.01 | HC |
| SRR4947480 | root | control | 24.02 | HC |
| SRR4947481 | root | control | 22.15 | HC |
| SRR4947484 | root | Al | 16.70 | HC |
| SRR4947485 | root | Al | 14.43 | HC |
| SRR4947488 | root | control | 22.57 | HC |
| SRR4947489 | root | control | 20.33 | HC |
| SRR4947492 | root | Al | 9.91 | HC |
| SRR4947493 | root | Al | 21.00 | HC |
| SRR4947497 | root | control | 12.95 | HC |
| SRR4947500 | root | Al | 15.78 | HC |
| SRR4947501 | root | Al | 20.48 | HC |
| SRR4947504 | root | control | 25.75 | HC |
| SRR4947505 | root | control | 26.98 | HC |
| SRR4947508 | root | Al | 15.81 | HC |
| SRR4947509 | root | Al | 8.20 | HC |
| SRR6502091 | root | 100 mM NaCl | 10.06 | HC |
| SRR6502092 | root | 100 mM NaCl | 8.69 | HC |
| SRR6502093 | root | 100 mM NaCl | 10.56 | HC |
| SRR6502094 | root | control | 11.55 | HC |
| SRR6502095 | root | control | 12.81 | HC |
| SRR6502096 | root | control | 10.16 | HC |
| SRR6502103 | root | 100 mM NaCl | 12.63 | HC |
| SRR6502104 | root | 100 mM NaCl | 10.64 | HC |
| SRR6502105 | root | 100 mM NaCl | 13.17 | HC |
| SRR6502106 | root | control | 11.30 | HC |
| SRR6502107 | root | control | 12.39 | HC |
| SRR6502108 | root | control | 12.39 | HC |
| SRR1740434 | root_differentiation_zone | wt | 3.85 | HC |
| SRR1740435 | root_differentiation_zone | wt | 7.63 | HC |
| SRR1740436 | root_differentiation_zone | wt | 9.30 | HC |
| SRR1740431 | root_elongation_zone | wt | 14.47 | HC |
| SRR1740432 | root_elongation_zone | wt | 18.70 | HC |
| SRR1740433 | root_elongation_zone | wt | 22.51 | HC |
| SRR1740428 | root_meristematic_zone | wt | 16.62 | HC |
| SRR1740429 | root_meristematic_zone | wt | 14.79 | HC |
| SRR1740430 | root_meristematic_zone | wt | 10.22 | HC |
| SRR6441555 | seedling | wild_type | 3.39 | HC |
| SRR2154086 | seedling | wt | 21.41 | HC |
| SRR2154085 | seedling | wt | 15.60 | HC |
| SRR2154087 | seedling | wt | 16.92 | HC |
| SRR3098742 | seedling | wt | 3.92 | HC |
| SRR3098743 | seedling | wt | 4.08 | HC |
| SRR2857719 | seedling | drought_stress_0h | 4.91 | HC |
| SRR2857720 | seedling | drought_stress_1h | 8.61 | HC |
| SRR2857721 | seedling | drought_stress_6h | 3.30 | HC |
| SRR358793 | seedling | wt | 7.27 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 14.84 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 10.36 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 14.76 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 7.28 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 10.49 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 10.01 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 6.90 | HC |
| SRR5796942 | shoot | "Control,22C for 10 min, then 30C for 10 min" | 4.11 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 5.94 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 4.09 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.02 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 5.80 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.77 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.44 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.11 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 5.09 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 2.57 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 7.64 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 8.36 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 6.62 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 48.96 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 49.98 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 51.94 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 43.08 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 53.00 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 62.35 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 60.23 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 54.88 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 47.44 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 58.32 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 58.20 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 53.00 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 64.04 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 51.54 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 60.27 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 50.84 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 52.16 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 61.45 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 53.29 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 73.19 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 61.36 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 63.85 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 75.89 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 11.39 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 10.99 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 26.24 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 27.98 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 20.93 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 36.01 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 35.07 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 38.27 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 58.97 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 59.79 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 68.97 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 51.09 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 59.16 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 51.76 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 23.60 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 24.88 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 14.27 | HC |