| SRR358795 | callus | wt | 21.22 | HC |
| SRR358796 | callus | wt | 22.42 | HC |
| SRR358797 | callus | wt | 16.64 | HC |
| SRR358798 | callus | wt | 20.52 | HC |
| SRR5560728 | caryopsis | wild_type | 6.13 | HC |
| SRR5560729 | caryopsis | wild_type | 8.32 | HC |
| SRR3015587 | coleoptile | wild_type_plus_1hr_shade | 10.66 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 13.10 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 10.16 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 10.05 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 41.35 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 48.61 | HC |
| SRR7265398 | embryo | 24hN | 4.89 | HC |
| SRR2338868 | endosprem | high_temperature | 4.06 | HC |
| SRR2338869 | endosprem | high_temperature | 5.86 | HC |
| SRR1213690 | flower | wt(flower buds) | 8.97 | HC |
| SRR1213691 | flower | wt | 14.11 | HC |
| SRR8240824 | leaf | wild_type | 9.03 | HC |
| SRR8240825 | leaf | wild_type | 5.78 | HC |
| SRR8240818 | leaf | wild_type | 2.50 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 18.30 | HC |
| SRR3015594 | leaf | wild_type_plus_1hr_shade | 8.35 | HC |
| SRR3015595 | leaf | wild_type_plus_1hr_white_light | 10.34 | HC |
| SRR3015597 | leaf | wild_type_plus_1hr_white_light | 12.48 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 4.58 | HC |
| SRR3209773 | leaf | Watered;Short_Day | 6.01 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 5.31 | HC |
| SRR3209777 | leaf | Watered;Long_Day | 12.05 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 4.46 | HC |
| SRR8611901 | leaf | Non-inoculated | 4.40 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 5.13 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 4.45 | HC |
| SRR6216698 | leaf | nontransgenic rice plant | 13.54 | HC |
| SRR6216699 | leaf | nontransgenic rice plant | 13.19 | HC |
| SRR6502088 | leaf | control | 4.29 | HC |
| SRR6502100 | leaf | control | 7.55 | HC |
| SRR6502101 | leaf | control | 6.88 | HC |
| SRR6502102 | leaf | control | 6.67 | HC |
| SRR8582888 | panicle | AM | 6.56 | HC |
| SRR8582889 | panicle | AM | 6.92 | HC |
| SRR8582890 | panicle | AM | 4.34 | HC |
| SRR8582891 | panicle | PM | 9.74 | HC |
| SRR8582893 | panicle | PM | 14.30 | HC |
| SRR4947496 | root | control | 41.72 | HC |
| SRR1213696 | endosprem | wt(milk grains) | 3.13 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 10.70 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 11.56 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 13.51 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 14.61 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 31.11 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 43.66 | HC |
| SRR5126147 | root | "mock,1_day" | 17.82 | HC |
| SRR5126148 | root | "mock,1_day" | 24.95 | HC |
| SRR5126149 | root | "mock,1_day" | 15.24 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 6.79 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 11.59 | HC |
| SRR5126152 | root | "auxin(50CM_2,4_D),1_day" | 17.50 | HC |
| SRR5126153 | root | "mock,7_days" | 12.79 | HC |
| SRR5126155 | root | "mock,7_days" | 10.74 | HC |
| SRR5126157 | root | "mock,7_days" | 16.44 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 9.89 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 13.55 | HC |
| SRR5126163 | root | "auxin(50CM_2,4_D),7_days" | 16.71 | HC |
| SRR5126167 | root | "mock,14_days" | 7.86 | HC |
| SRR5126169 | root | "mock,14_days" | 11.31 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 11.25 | HC |
| SRR5126173 | root | "auxin(50CM_2,4_D),14_days" | 10.76 | HC |
| SRR5126175 | root | "auxin(50CM_2,4_D),14_days" | 10.68 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 15.35 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 10.24 | HC |
| SRR1213694 | root | wt | 8.46 | HC |
| SRR4947480 | root | control | 39.49 | HC |
| SRR4947481 | root | control | 31.53 | HC |
| SRR4947484 | root | Al | 41.77 | HC |
| SRR4947485 | root | Al | 17.90 | HC |
| SRR4947488 | root | control | 47.76 | HC |
| SRR4947489 | root | control | 45.47 | HC |
| SRR4947492 | root | Al | 40.98 | HC |
| SRR4947493 | root | Al | 34.23 | HC |
| SRR4947497 | root | control | 29.37 | HC |
| SRR4947500 | root | Al | 31.16 | HC |
| SRR4947501 | root | Al | 10.96 | HC |
| SRR4947504 | root | control | 33.19 | HC |
| SRR4947505 | root | control | 43.67 | HC |
| SRR4947508 | root | Al | 25.39 | HC |
| SRR4947509 | root | Al | 34.90 | HC |
| SRR6502091 | root | 100 mM NaCl | 20.47 | HC |
| SRR6502092 | root | 100 mM NaCl | 29.03 | HC |
| SRR6502093 | root | 100 mM NaCl | 23.22 | HC |
| SRR6502094 | root | control | 27.02 | HC |
| SRR6502095 | root | control | 31.92 | HC |
| SRR6502096 | root | control | 33.14 | HC |
| SRR6502103 | root | 100 mM NaCl | 23.53 | HC |
| SRR6502104 | root | 100 mM NaCl | 29.06 | HC |
| SRR6502105 | root | 100 mM NaCl | 25.67 | HC |
| SRR6502106 | root | control | 29.40 | HC |
| SRR6502107 | root | control | 35.09 | HC |
| SRR6502108 | root | control | 34.60 | HC |
| SRR1740434 | root_differentiation_zone | wt | 9.66 | HC |
| SRR1740435 | root_differentiation_zone | wt | 12.49 | HC |
| SRR1740436 | root_differentiation_zone | wt | 7.64 | HC |
| SRR1740431 | root_elongation_zone | wt | 20.00 | HC |
| SRR1740432 | root_elongation_zone | wt | 14.44 | HC |
| SRR1740433 | root_elongation_zone | wt | 17.35 | HC |
| SRR1740428 | root_meristematic_zone | wt | 23.49 | HC |
| SRR1740429 | root_meristematic_zone | wt | 17.71 | HC |
| SRR1740430 | root_meristematic_zone | wt | 11.48 | HC |
| SRR6441554 | seedling | wild_type | 4.45 | HC |
| SRR6441555 | seedling | wild_type | 6.97 | HC |
| SRR2154086 | seedling | wt | 13.80 | HC |
| SRR2154085 | seedling | wt | 9.83 | HC |
| SRR2154087 | seedling | wt | 12.71 | HC |
| SRR3098741 | seedling | wt | 2.78 | HC |
| SRR3098742 | seedling | wt | 6.57 | HC |
| SRR3098743 | seedling | wt | 5.40 | HC |
| SRR2857719 | seedling | drought_stress_0h | 11.44 | HC |
| SRR2857720 | seedling | drought_stress_1h | 7.72 | HC |
| SRR2857721 | seedling | drought_stress_6h | 5.26 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 13.14 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 14.47 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 10.79 | HC |
| SRR1288366 | shoot | "none,7_days_post_infection" | 14.58 | HC |
| SRR1288369 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 18.16 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 11.38 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 8.05 | HC |
| SRR4841742 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 13.96 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 10.87 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 6.16 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 5.55 | HC |
| SRR5796941 | shoot | "Control,22C for 10 min" | 5.03 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.93 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 7.47 | HC |
| SRR5796948 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 6.31 | HC |
| SRR5796949 | shoot | "Control,22C for 10 min, then 30C for 9h50 min" | 7.95 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 3.93 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.12 | HC |
| SRR5796953 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 3.65 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.12 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 7.31 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 8.20 | HC |
| SRR5796958 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 5.40 | HC |
| SRR5796959 | shoot | "Heat,42C for 10 min, then 30C for 9h50 min" | 9.01 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 43.10 | HC |
| SRR5052709 | shoot_apical_meristem | 0_days_after_shift | 45.72 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 49.13 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 71.48 | HC |
| SRR5052713 | shoot_apical_meristem | 4_days_after_shift | 46.25 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 54.06 | HC |
| SRR5052716 | shoot_apical_meristem | 8_days_after_shift | 53.36 | HC |
| SRR5052719 | shoot_apical_meristem | 8_days_after_shift | 48.16 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 58.89 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 54.79 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 54.64 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 49.90 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 50.80 | HC |
| SRR5052725 | shoot_apical_meristem | 0_days_after_shift | 48.48 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 47.01 | HC |
| SRR5052727 | shoot_apical_meristem | 4_days_after_shift | 62.40 | HC |
| SRR5052728 | shoot_apical_meristem | 4_days_after_shift | 54.62 | HC |
| SRR5052730 | shoot_apical_meristem | 4_days_after_shift | 54.88 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 56.92 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 49.45 | HC |
| SRR5052733 | shoot_apical_meristem | 8_days_after_shift | 59.07 | HC |
| SRR5052734 | shoot_apical_meristem | 12_days_after_shift | 55.96 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 79.55 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 13.10 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 13.82 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 26.15 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 33.10 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 22.57 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 50.23 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 46.18 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 48.88 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 122.00 | HC |
| SRR3129122 | spikelet | Wild_type_9522_S3 | 133.53 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 151.96 | HC |
| SRR3129124 | spikelet | Wild_type_9522_S5 | 79.96 | HC |
| SRR3129125 | spikelet | Wild_type_9522_S5 | 98.11 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 77.88 | HC |
| SRR3129127 | spikelet | Wild_type_9522_S7 | 100.45 | HC |
| SRR3129128 | spikelet | Wild_type_9522_S7 | 95.85 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 113.26 | HC |