| SRR4457250 | 2nd_leaf | DAH4 | 6.65 | HC |
| SRR4457251 | 2nd_leaf | DAH4 | 3.66 | HC |
| SRR4457252 | 2nd_leaf | DAH12 | 4.25 | HC |
| SRR4457253 | 2nd_leaf | DAH12 | 5.37 | HC |
| SRR4457254 | 2nd_leaf | DAH12 | 4.82 | HC |
| SRR4457255 | 2nd_leaf | DAH20 | 6.76 | HC |
| SRR4457256 | 2nd_leaf | DAH20 | 8.57 | HC |
| SRR4457257 | 2nd_leaf | DAH20 | 9.53 | HC |
| SRR4457258 | 2nd_leaf | DAH28 | 8.06 | HC |
| SRR4457259 | 2nd_leaf | DAH28 | 8.92 | HC |
| SRR4457260 | 2nd_leaf | DAH28 | 8.19 | HC |
| SRR4457262 | 2nd_leaf | DAH36 | 5.58 | HC |
| SRR4457263 | 2nd_leaf | DAH36 | 6.00 | HC |
| SRR4457264 | 2nd_leaf | DAH44 | 14.46 | HC |
| SRR4457265 | 2nd_leaf | DAH44 | 6.19 | HC |
| SRR4457266 | 2nd_leaf | DAH44 | 10.84 | HC |
| SRR358795 | callus | wt | 14.86 | HC |
| SRR358796 | callus | wt | 13.32 | HC |
| SRR358797 | callus | wt | 14.30 | HC |
| SRR358798 | callus | wt | 15.07 | HC |
| SRR6320473 | carpel | wt | 9.27 | HC |
| SRR5560727 | caryopsis | wild_type | 8.37 | HC |
| SRR5560728 | caryopsis | wild_type | 8.54 | HC |
| SRR5560729 | caryopsis | wild_type | 7.28 | HC |
| SRR3015588 | coleoptile | wild_type_plus_1hr_shade | 7.56 | HC |
| SRR3015589 | coleoptile | wild_type_plus_1hr_white_light | 3.94 | HC |
| SRR3015591 | coleoptile | wild_type_plus_1hr_white_light | 4.48 | HC |
| SRR4104639 | crown | "Zn_deficiency,8_days_of_treatment" | 5.57 | HC |
| SRR4104645 | crown | "Zn_Efficient,8_days_of_treatment" | 4.51 | HC |
| SRR4104637 | crown | "Zn_deficiency,8_days_of_treatment" | 4.80 | HC |
| SRR4104642 | crown | "Zn_deficiency,8_days_of_treatment" | 6.77 | HC |
| SRR4104643 | crown | "Zn_Efficient,8_days_of_treatment" | 4.51 | HC |
| SRR4104644 | crown | "Zn_Efficient,8_days_of_treatment" | 5.68 | HC |
| SRR4104648 | crown | "Zn_Efficient,8_days_of_treatment" | 5.97 | HC |
| SRR4104646 | crown | "Zn_Efficient,8_days_of_treatment" | 4.03 | HC |
| SRR7265373 | embryo | dry seed 0 h | 4.98 | HC |
| SRR7265374 | embryo | dry seed 0 h | 5.75 | HC |
| SRR7265375 | embryo | dry seed 0 h | 2.75 | HC |
| SRR7265376 | embryo | 1hA | 5.02 | HC |
| SRR7265377 | embryo | 1hA | 8.46 | HC |
| SRR7265378 | embryo | 1hA | 7.10 | HC |
| SRR7265379 | embryo | 1hN | 5.14 | HC |
| SRR7265380 | embryo | 1hN | 9.54 | HC |
| SRR7265381 | embryo | 1hN | 5.15 | HC |
| SRR7265382 | embryo | 3hA | 4.95 | HC |
| SRR7265385 | embryo | 3hN | 6.99 | HC |
| SRR7265387 | embryo | 3hN | 6.00 | HC |
| SRR7265388 | embryo | 12hA | 5.50 | HC |
| SRR7265389 | embryo | 12hA | 6.93 | HC |
| SRR7265392 | embryo | 12hN | 5.80 | HC |
| SRR7265393 | embryo | 12hN | 5.32 | HC |
| SRR4457231 | flag_leaf | DAH4 | 4.36 | HC |
| SRR4457233 | flag_leaf | DAH4 | 4.35 | HC |
| SRR4457234 | flag_leaf | DAH12 | 4.72 | HC |
| SRR4457235 | flag_leaf | DAH12 | 4.93 | HC |
| SRR4457236 | flag_leaf | DAH12 | 6.25 | HC |
| SRR4457237 | flag_leaf | DAH20 | 7.25 | HC |
| SRR4457238 | flag_leaf | DAH20 | 8.68 | HC |
| SRR4457239 | flag_leaf | DAH20 | 10.41 | HC |
| SRR4457240 | flag_leaf | DAH28 | 14.53 | HC |
| SRR4457241 | flag_leaf | DAH28 | 16.43 | HC |
| SRR4457242 | flag_leaf | DAH28 | 7.52 | HC |
| SRR4457243 | flag_leaf | DAH36 | 5.47 | HC |
| SRR4457244 | flag_leaf | DAH36 | 5.00 | HC |
| SRR4457245 | flag_leaf | DAH36 | 6.42 | HC |
| SRR4457246 | flag_leaf | DAH44 | 8.54 | HC |
| SRR4457247 | flag_leaf | DAH44 | 12.62 | HC |
| SRR4457248 | flag_leaf | DAH44 | 11.31 | HC |
| SRR1213691 | flower | wt | 5.48 | HC |
| SRR8060835 | leaf | wild_type | 4.59 | HC |
| SRR8060836 | leaf | wild_type | 4.44 | HC |
| SRR8060837 | leaf | wild_type | 3.11 | HC |
| SRR8240824 | leaf | wild_type | 6.91 | HC |
| SRR8240825 | leaf | wild_type | 6.26 | HC |
| SRR8240826 | leaf | wild_type | 6.42 | HC |
| SRR8240818 | leaf | wild_type | 3.92 | HC |
| SRR8240819 | leaf | wild_type | 4.01 | HC |
| SRR8240820 | leaf | wild_type | 5.00 | HC |
| SRR3015592 | leaf | wild_type_plus_1hr_shade | 4.68 | HC |
| SRR2922623 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 8.83 | HC |
| SRR2922624 | leaf | Xanthomonas_oryzae_pv._oryzicola_strain_BLS254 | 6.12 | HC |
| SRR1952778 | leaf | 48_hrs_after_inoculation_with_BLS256 | 8.81 | HC |
| SRR1952779 | leaf | 48_hrs_after_inoculation_with_BLS256 | 9.51 | HC |
| SRR1952782 | leaf | 48_hrs_after_inoculation_with_BLS279 | 7.01 | HC |
| SRR1952783 | leaf | 48_hrs_after_inoculation_with_BLS279 | 5.18 | HC |
| SRR1952784 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 7.70 | HC |
| SRR1952785 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 8.68 | HC |
| SRR1952786 | leaf | 48_hrs_after_inoculation_with_CFBP2286 | 7.64 | HC |
| SRR1952787 | leaf | 48_hrs_after_inoculation_with_B8_12 | 9.71 | HC |
| SRR1952788 | leaf | 48_hrs_after_inoculation_with_B8_12 | 7.80 | HC |
| SRR1952789 | leaf | 48_hrs_after_inoculation_with_B8_12 | 5.63 | HC |
| SRR1952790 | leaf | 48_hrs_after_inoculation_with_L8 | 11.33 | HC |
| SRR1952791 | leaf | 48_hrs_after_inoculation_with_L8 | 10.90 | HC |
| SRR1952792 | leaf | 48_hrs_after_inoculation_with_L8 | 11.93 | HC |
| SRR1952793 | leaf | 48_hrs_after_inoculation_with_RS105 | 4.75 | HC |
| SRR1952794 | leaf | 48_hrs_after_inoculation_with_RS105 | 6.44 | HC |
| SRR1952795 | leaf | 48_hrs_after_inoculation_with_RS105 | 11.34 | HC |
| SRR1952797 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 5.50 | HC |
| SRR1952798 | leaf | 48_hrs_after_inoculation_with_BXOR1 | 10.26 | HC |
| SRR1952799 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 11.11 | HC |
| SRR1952801 | leaf | 48_hrs_after_inoculation_with_CFBP7331 | 3.75 | HC |
| SRR1952803 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 10.46 | HC |
| SRR1952804 | leaf | 48_hrs_after_inoculation_with_CFBP7341 | 6.55 | HC |
| SRR1952805 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 10.91 | HC |
| SRR1952806 | leaf | 48_hrs_after_inoculation_with_CFBP7342 | 5.17 | HC |
| SRR1952809 | leaf | 48_hrs_after_mock_inoculation | 9.03 | HC |
| SRR1952810 | leaf | 48_hrs_after_mock_inoculation | 5.57 | HC |
| SRR1761788 | leaf | "wild_type,drought,2" | 9.87 | HC |
| SRR1761789 | leaf | "wild_type,drought,2" | 13.84 | HC |
| SRR1761790 | leaf | "wild_type,control,2" | 12.92 | HC |
| SRR1761791 | leaf | "wild_type,control,2" | 13.84 | HC |
| SRR1761780 | leaf | "wild_type,drought,1" | 9.87 | HC |
| SRR1761781 | leaf | "wild_type,drought,1" | 13.84 | HC |
| SRR1761782 | leaf | "wild_type,control,1" | 12.92 | HC |
| SRR1761783 | leaf | "wild_type,control,1" | 13.84 | HC |
| SRR1761528 | leaf | drought | 9.87 | HC |
| SRR1761529 | leaf | drought | 13.84 | HC |
| SRR1761530 | leaf | control | 12.92 | HC |
| SRR1761531 | leaf | control | 13.84 | HC |
| SRR504365 | leaf | wt | 13.13 | HC |
| SRR6417964 | leaf | Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.38 | HC |
| SRR6417967 | leaf | H2O_control | 4.26 | HC |
| SRR6417968 | leaf | H2O_control | 5.24 | HC |
| SRR3209769 | leaf | Watered;Long_Day | 4.85 | HC |
| SRR3209770 | leaf | Watered;Long_Day | 7.51 | HC |
| SRR3209772 | leaf | Drought;Long_Day | 11.97 | HC |
| SRR3209774 | leaf | Watered;Short_Day | 8.13 | HC |
| SRR3209775 | leaf | Drought;Short_Day | 11.82 | HC |
| SRR3209776 | leaf | Drought;Short_Day | 10.77 | HC |
| SRR3209778 | leaf | Drought;Long_Day | 13.38 | HC |
| SRR3209779 | leaf | Watered;Short_Day | 6.39 | HC |
| SRR3209780 | leaf | Drought;Short_Day | 9.46 | HC |
| SRR8611900 | leaf | Non-inoculated | 8.56 | HC |
| SRR8611901 | leaf | Non-inoculated | 8.75 | HC |
| SRR8611902 | leaf | Non-inoculated | 3.76 | HC |
| SRR8611909 | leaf | Inoculated with Pyricularia oryzae | 8.27 | HC |
| SRR8611910 | leaf | Inoculated with Pyricularia oryzae | 8.55 | HC |
| SRR8611911 | leaf | Inoculated with Pyricularia oryzae | 8.83 | HC |
| SRR1213693 | leaf | wt | 5.51 | HC |
| SRR6502085 | leaf | 100 mM NaCl | 12.08 | HC |
| SRR6502086 | leaf | 100 mM NaCl | 10.49 | HC |
| SRR6502087 | leaf | 100 mM NaCl | 9.54 | HC |
| SRR6502088 | leaf | control | 11.54 | HC |
| SRR6502089 | leaf | control | 10.73 | HC |
| SRR6502090 | leaf | control | 9.34 | HC |
| SRR6502097 | leaf | 100 mM NaCl | 14.51 | HC |
| SRR6502098 | leaf | 100 mM NaCl | 11.47 | HC |
| SRR6502099 | leaf | 100 mM NaCl | 6.06 | HC |
| SRR6502100 | leaf | control | 11.29 | HC |
| SRR6502101 | leaf | control | 4.71 | HC |
| SRR6502102 | leaf | control | 11.67 | HC |
| SRR5856927 | leaf | control | 2.74 | HC |
| SRR5856929 | leaf | control | 2.27 | HC |
| SRR5856930 | leaf | salt | 2.77 | HC |
| SRR5856931 | leaf | salt | 1.99 | HC |
| SRR5856932 | leaf | salt | 2.21 | HC |
| SRR5856933 | leaf | control | 3.34 | HC |
| SRR5856934 | leaf | control | 3.23 | HC |
| SRR5856935 | leaf | control | 3.79 | HC |
| SRR5856936 | leaf | salt | 1.96 | HC |
| SRR5856937 | leaf | salt | 2.05 | HC |
| SRR5856938 | leaf | salt | 2.32 | HC |
| SRR6168973 | leaf | none (control) | 5.86 | HC |
| SRR6168974 | leaf | none (control) | 6.26 | HC |
| SRR6168975 | leaf | none (control) | 6.37 | HC |
| SRR6168976 | leaf | 0.5% Na2CO3 solution for 36h | 11.56 | HC |
| SRR6168977 | leaf | 0.5% Na2CO3 solution for 36h | 5.45 | HC |
| SRR6168978 | leaf | 0.5% Na2CO3 solution for 36h | 11.26 | HC |
| SRR6168979 | leaf | none (control) | 2.57 | HC |
| SRR6168981 | leaf | none (control) | 4.04 | HC |
| SRR6168982 | leaf | 0.5% Na2CO3 solution for 36h | 5.12 | HC |
| SRR6168983 | leaf | 0.5% Na2CO3 solution for 36h | 4.29 | HC |
| SRR6168984 | leaf | 0.5% Na2CO3 solution for 36h | 4.25 | HC |
| SRR8582890 | panicle | AM | 3.11 | HC |
| SRR8582892 | panicle | PM | 8.23 | HC |
| SRR5110429 | panicle | Dawn | 6.03 | HC |
| SRR5110433 | panicle | Dawn + 3.5h | 6.47 | HC |
| SRR5110442 | panicle | Dawn + 10.5h | 4.47 | HC |
| SRR5110443 | panicle | Dawn + 10.5h | 4.67 | HC |
| SRR5110447 | panicle | Dusk | 6.18 | HC |
| SRR5110452 | panicle | Dawn + 14h | 6.19 | HC |
| SRR1213697 | endosprem | wt(mature seeds) | 6.68 | HC |
| SRR5278374 | pistil | "Balilla,S1" | 8.71 | HC |
| SRR5278375 | pistil | "Balilla,S1" | 5.70 | HC |
| SRR5278376 | pistil | "Balilla,S2" | 5.72 | HC |
| SRR5278377 | pistil | "Balilla,S2" | 5.49 | HC |
| SRR5278378 | pistil | "Balilla,S3" | 10.22 | HC |
| SRR5278379 | pistil | "Balilla,S3" | 13.50 | HC |
| SRR5126147 | root | "mock,1_day" | 4.41 | HC |
| SRR5126148 | root | "mock,1_day" | 4.12 | HC |
| SRR5126150 | root | "auxin(50CM_2,4_D),1_day" | 5.41 | HC |
| SRR5126151 | root | "auxin(50CM_2,4_D),1_day" | 6.65 | HC |
| SRR5126155 | root | "mock,7_days" | 5.83 | HC |
| SRR5126157 | root | "mock,7_days" | 7.77 | HC |
| SRR5126159 | root | "auxin(50CM_2,4_D),7_days" | 5.50 | HC |
| SRR5126161 | root | "auxin(50CM_2,4_D),7_days" | 7.43 | HC |
| SRR5126165 | root | "mock,14_days" | 7.72 | HC |
| SRR5126171 | root | "auxin(50CM_2,4_D),14_days" | 5.60 | HC |
| SRR3472897 | root | nontransgenic_rice_plant | 6.27 | HC |
| SRR3472900 | root | nontransgenic_rice_plant | 4.43 | HC |
| SRR4947480 | root | control | 8.02 | HC |
| SRR4947485 | root | Al | 7.22 | HC |
| SRR4947489 | root | control | 6.59 | HC |
| SRR4947492 | root | Al | 6.01 | HC |
| SRR4947497 | root | control | 7.60 | HC |
| SRR4947499 | root | Al | 5.64 | HC |
| SRR4947500 | root | Al | 7.98 | HC |
| SRR4947501 | root | Al | 8.05 | HC |
| SRR4947505 | root | control | 7.40 | HC |
| SRR4947509 | root | Al | 6.65 | HC |
| SRR6502091 | root | 100 mM NaCl | 11.65 | HC |
| SRR6502092 | root | 100 mM NaCl | 15.60 | HC |
| SRR6502093 | root | 100 mM NaCl | 14.79 | HC |
| SRR6502094 | root | control | 14.83 | HC |
| SRR6502096 | root | control | 9.98 | HC |
| SRR6502103 | root | 100 mM NaCl | 15.23 | HC |
| SRR6502105 | root | 100 mM NaCl | 18.84 | HC |
| SRR6502106 | root | control | 9.05 | HC |
| SRR6502107 | root | control | 13.92 | HC |
| SRR1740434 | root_differentiation_zone | wt | 8.28 | HC |
| SRR1740435 | root_differentiation_zone | wt | 4.35 | HC |
| SRR1740436 | root_differentiation_zone | wt | 4.34 | HC |
| SRR1740431 | root_elongation_zone | wt | 6.45 | HC |
| SRR1740433 | root_elongation_zone | wt | 7.75 | HC |
| SRR1740428 | root_meristematic_zone | wt | 9.04 | HC |
| SRR1740429 | root_meristematic_zone | wt | 5.45 | HC |
| SRR1740430 | root_meristematic_zone | wt | 9.03 | HC |
| SRR2154086 | seedling | wt | 8.46 | HC |
| SRR2154085 | seedling | wt | 7.47 | HC |
| SRR2154087 | seedling | wt | 7.93 | HC |
| SRR3098742 | seedling | wt | 3.36 | HC |
| SRR3098743 | seedling | wt | 3.85 | HC |
| SRR2857720 | seedling | drought_stress_1h | 5.05 | HC |
| SRR1944583 | seedling | no_treatment | 8.51 | HC |
| SRR358791 | seedling | wt | 13.19 | HC |
| SRR358792 | seedling | wt | 13.07 | HC |
| SRR358793 | seedling | wt | 11.49 | HC |
| SRR358794 | seedling | wt | 11.52 | HC |
| SRR1288363 | shoot | "none,3_days_post_infection" | 7.98 | HC |
| SRR1288364 | shoot | "none,3_days_post_infection" | 6.23 | HC |
| SRR1288365 | shoot | "none,7_days_post_infection" | 6.52 | HC |
| SRR1288370 | shoot | "roots_rot_nematode_(H._oryzae),7_days_post_infection" | 8.13 | HC |
| SRR4841741 | shoot | shoots_of_Meloidogyne_graminicola_infected_3_dai | 4.89 | HC |
| SRR4841743 | shoot | shoots_of_Meloidogyne_graminicola_infected_7_dai | 8.95 | HC |
| SRR3950244 | shoot | Drought_during_3_days;Fr13_inoculated | 6.06 | HC |
| SRR3950245 | shoot | Drought_during_3_days;Fr13_inoculated | 7.59 | HC |
| SRR3950246 | shoot | Drought_during_3_days;Fr13_inoculated | 7.40 | HC |
| SRR3950247 | shoot | No_DIS;Fr13_inoculated | 5.03 | HC |
| SRR3950248 | shoot | No_DIS;Fr13_inoculated | 5.54 | HC |
| SRR3950249 | shoot | No_DIS;Fr13_inoculated | 6.39 | HC |
| SRR3950250 | shoot | Drought_during_3_days;_mock_inoculated | 4.55 | HC |
| SRR3950251 | shoot | Drought_during_3_days;_mock_inoculated | 6.46 | HC |
| SRR3950253 | shoot | No_DIS;_mock_inoculated | 4.14 | HC |
| SRR3950254 | shoot | No_DIS;_mock_inoculated | 5.37 | HC |
| SRR3950255 | shoot | No_DIS;_mock_inoculated | 6.59 | HC |
| SRR5796940 | shoot | "Control,22C for 10 min" | 7.00 | HC |
| SRR5796945 | shoot | "Control, 22C for 10 min, then 30C for 50 min" | 4.64 | HC |
| SRR5796946 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 3.82 | HC |
| SRR5796947 | shoot | "Control,22C for 10 min, then 30C for 1h50 min" | 6.43 | HC |
| SRR5796950 | shoot | "Heat,42C for 10 min" | 4.02 | HC |
| SRR5796951 | shoot | "Heat,42C for 10 min" | 4.13 | HC |
| SRR5796952 | shoot | "Heat,42C for 10 min, then 30C for 10 min" | 4.94 | HC |
| SRR5796954 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 4.13 | HC |
| SRR5796955 | shoot | "Heat, 42C for 10 min, then 30C for 50 min" | 3.05 | HC |
| SRR5796956 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 5.94 | HC |
| SRR5796957 | shoot | "Heat,42C for 10 min, then 30C for 1h50 min" | 4.08 | HC |
| SRR5052708 | shoot_apical_meristem | 0_days_after_shift | 10.52 | HC |
| SRR5052710 | shoot_apical_meristem | 0_days_after_shift | 11.09 | HC |
| SRR5052711 | shoot_apical_meristem | 4_days_after_shift | 11.84 | HC |
| SRR5052714 | shoot_apical_meristem | 4_days_after_shift | 8.74 | HC |
| SRR5052720 | shoot_apical_meristem | 8_days_after_shift | 17.13 | HC |
| SRR5052721 | shoot_apical_meristem | 12_days_after_shift | 9.84 | HC |
| SRR5052722 | shoot_apical_meristem | 12_days_after_shift | 9.51 | HC |
| SRR5052723 | shoot_apical_meristem | 12_days_after_shift | 11.52 | HC |
| SRR5052724 | shoot_apical_meristem | 0_days_after_shift | 13.22 | HC |
| SRR5052726 | shoot_apical_meristem | 0_days_after_shift | 12.94 | HC |
| SRR5052731 | shoot_apical_meristem | 8_days_after_shift | 9.14 | HC |
| SRR5052732 | shoot_apical_meristem | 8_days_after_shift | 13.25 | HC |
| SRR5052735 | shoot_apical_meristem | 12_days_after_shift | 16.44 | HC |
| SRR1617549 | shoot_apical_meristem | no collect | 8.50 | HC |
| SRR1617550 | shoot_apical_meristem | no collect | 15.52 | HC |
| SRR1617553 | shoot_apical_meristem | no collect | 12.41 | HC |
| SRR1617554 | shoot_apical_meristem | no collect | 11.82 | HC |
| SRR1617556 | shoot_apical_meristem | no collect | 8.82 | HC |
| SRR1617557 | shoot_apical_meristem | no collect | 10.70 | HC |
| SRR1617558 | shoot_apical_meristem | no collect | 10.88 | HC |
| SRR1617559 | shoot_apical_meristem | no collect | 7.97 | HC |
| SRR3129121 | spikelet | Wild_type_9522_S3 | 3.82 | HC |
| SRR3129123 | spikelet | Wild_type_9522_S3 | 5.20 | HC |
| SRR3129126 | spikelet | Wild_type_9522_S5 | 7.27 | HC |
| SRR3129129 | spikelet | Wild_type_9522_S7 | 7.34 | HC |